Started by upstream project "BIOFORMATS-test-repo" build number 273
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins13961612605980296470.sh
+ '[' cellr = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_43109_merge_ci -v /uod/idr/repos/curated/cellr:/data -v /uod/idr-scratch/merge-ci/curated/cellr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 12:20:32,525 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 12:20:32,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 12:20:32,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 12:20:32,528 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 12:20:32,528 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 12:20:32,528 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 12:20:32,529 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 12:20:32,529 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 12:20:32,529 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 12:20:32,530 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 12:20:32,530 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 12:20:32,530 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 12:20:32,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 12:20:32,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 12:20:32,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 12:20:32,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 12:20:32,820 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 12:20:32,821 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 12:20:32,821 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 12:20:32,821 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 12:20:32,821 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 12:20:32,822 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 12:20:32,822 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 293 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-29 12:20:32,833] [main] java.version = 1.8.0_342
[testng] 12:20:32,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 12:20:32,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:20:32,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_12-20-32.log]
[testng] 12:20:32,884 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-11-29 12:20:32,886] [main] testng.directory = /data
[testng] [2024-11-29 12:20:32,887] [main] testng.configDirectory = /config
[testng] [2024-11-29 12:20:32,900] [main] testng.multiplier = 1.0
[testng] [2024-11-29 12:20:32,901] [main] testng.in-memory = false
[testng] [2024-11-29 12:20:32,901] [main] testng.allow-missing = false
[testng] [2024-11-29 12:20:32,901] [main] user.language = en
[testng] [2024-11-29 12:20:32,901] [main] user.country = ${user.country}
[testng] [2024-11-29 12:20:32,901] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-11-29 12:22:41,480] [main] ----------------------------------------
[testng] [2024-11-29 12:22:41,480] [main] Total files: 256
[testng] [2024-11-29 12:22:41,480] [main] Scan time: 128.578 s (502 ms/file)
[testng] [2024-11-29 12:22:41,480] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-29 12:28:29,409] [pool-1-thread-1] Initializing /data/viktorie/090902/090902_d.mtb:
[testng] 12:28:29,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 12:28:29,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:28:29,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-29_12-28-29.log]
[testng] 12:28:29,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@702bb57a - End of configuration.
[testng] [2024-11-29 12:28:30,408] [pool-1-thread-12] Initializing /data/viktorie/2Channels.tif:
[testng] 12:28:30,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 12:28:30,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:28:30,409 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-29_12-28-30.log]
[testng] 12:28:30,409 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20e83890 - End of configuration.
[testng] [2024-11-29 12:28:32,736] [pool-1-thread-11] Initializing /data/colin/08-10-09/08-10-09_d.mtb:
[testng] 12:28:32,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 12:28:32,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:28:32,737 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-29_12-28-32.log]
[testng] 12:28:32,737 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32a5ae91 - End of configuration.
[testng] [2024-11-29 12:28:37,145] [pool-1-thread-10] Initializing /data/viktorie/Structure.jpg:
[testng] 12:28:37,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 12:28:37,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:28:37,146 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-29_12-28-37.log]
[testng] 12:28:37,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2881f37 - End of configuration.
[testng] [2024-11-29 12:28:37,378] [pool-1-thread-9] Initializing /data/qa-6659/12-07-05/12-07-05_d.mtb:
[testng] 12:28:37,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 12:28:37,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:28:37,378 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-29_12-28-37.log]
[testng] 12:28:37,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5be71fb7 - End of configuration.
[testng] [2024-11-29 12:28:39,888] [pool-1-thread-8] Initializing /data/clare/set_27_on_d.mtb:
[testng] 12:28:39,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 12:28:39,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:28:39,888 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-29_12-28-39.log]
[testng] 12:28:39,889 |-INFO in ch.qos.logback.core.sift.SiftProcessor@274f72c8 - End of configuration.
[testng] [2024-11-29 12:28:41,323] [pool-1-thread-7] Initializing /data/qa-17107/plain/Plain_d.mtb:
[testng] 12:28:41,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 12:28:41,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:28:41,324 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-29_12-28-41.log]
[testng] 12:28:41,324 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ee57a01 - End of configuration.
[testng] [2024-11-29 12:28:42,432] [pool-1-thread-6] Initializing /data/qa-17107/LifeScienceDemo/LifeScienceDemoSTAR_d.mtb:
[testng] 12:28:42,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 12:28:42,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:28:42,432 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-29_12-28-42.log]
[testng] 12:28:42,433 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35b1eca8 - End of configuration.
[testng] [2024-11-29 12:28:43,364] [pool-1-thread-5] Initializing /data/qa-17107/example2/example2_d.mtb:
[testng] 12:28:43,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 12:28:43,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:28:43,365 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-29_12-28-43.log]
[testng] 12:28:43,365 |-INFO in ch.qos.logback.core.sift.SiftProcessor@225dd9e5 - End of configuration.
[testng] [2024-11-29 12:28:44,468] [pool-1-thread-4] Initializing /data/qa-17107/MaterialsDemo/MaterialsDemo_d.mtb:
[testng] 12:28:44,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 12:28:44,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:28:44,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-29_12-28-44.log]
[testng] 12:28:44,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76304ad5 - End of configuration.
[testng] [2024-11-29 12:28:45,793] [pool-1-thread-3] Initializing /data/kees/Mariaelena_d.mtb:
[testng] 12:28:45,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 12:28:45,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:28:45,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-29_12-28-45.log]
[testng] 12:28:45,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26c6507b - End of configuration.
[testng] [2024-11-29 12:28:48,319] [pool-1-thread-2] Initializing /data/colin/07-06-21/07-06-21_d.mtb:
[testng] 12:28:48,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 12:28:48,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:28:48,320 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-29_12-28-48.log]
[testng] 12:28:48,321 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b70863d - End of configuration.
[testng] [2024-11-29 12:28:56,071] [pool-1-thread-10] Initializing /data/viktorie/test/test_d.mtb:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 10 minutes 54 seconds
Finished: SUCCESS