Started by upstream project "BIOFORMATS-test-repo" build number 274
originally caused by:
 Started by upstream project "Trigger" build number 295
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins13018599091122555056.sh
+ '[' avi = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_43209_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 01:41:51,535 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:41:51,537 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 01:41:51,537 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:41:51,538 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:41:51,538 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:41:51,539 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:41:51,539 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:41:51,539 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:41:51,539 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:41:51,540 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:41:51,540 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:41:51,540 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:41:51,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:41:51,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:41:51,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:41:51,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:41:51,745 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:41:51,745 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:41:51,745 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:41:51,746 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:41:51,746 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 01:41:51,746 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 01:41:51,747 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 208 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-30 01:41:51,756] [main] java.version = 11.0.16
   [testng] 01:41:51,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:41:51,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:41:51,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-30_01-41-51.log]
   [testng] 01:41:51,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-11-30 01:41:51,807] [main] testng.directory = /data
   [testng] [2024-11-30 01:41:51,808] [main] testng.configDirectory = /config
   [testng] [2024-11-30 01:41:51,819] [main] testng.multiplier = 1.0
   [testng] [2024-11-30 01:41:51,820] [main] testng.in-memory = false
   [testng] [2024-11-30 01:41:51,820] [main] testng.allow-missing = false
   [testng] [2024-11-30 01:41:51,820] [main] user.language = en
   [testng] [2024-11-30 01:41:51,820] [main] user.country = ${user.country}
   [testng] [2024-11-30 01:41:51,820] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-11-30 01:41:56,953] [main] ----------------------------------------
   [testng] [2024-11-30 01:41:56,953] [main] Total files: 40
   [testng] [2024-11-30 01:41:56,953] [main] Scan time: 5.133 s (128 ms/file)
   [testng] [2024-11-30 01:41:56,954] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 38 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-30 01:42:41,532] [pool-1-thread-1] Initializing /data/curtis/mri-stack-bf.avi: 
   [testng] 01:42:41,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:42:41,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:41,535 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-30_01-42-41.log]
   [testng] 01:42:41,536 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4efbc81a - End of configuration.
   [testng] [2024-11-30 01:42:41,735] [pool-1-thread-12] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: 
   [testng] 01:42:41,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:42:41,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:41,736 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-30_01-42-41.log]
   [testng] 01:42:41,737 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55a5f976 - End of configuration.
   [testng] [2024-11-30 01:42:41,896] [pool-1-thread-11] Initializing /data/chip_avi/Level001-ES-083.avi: 
   [testng] 01:42:41,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:42:41,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:41,897 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-30_01-42-41.log]
   [testng] 01:42:41,897 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62c20b70 - End of configuration.
   [testng] [2024-11-30 01:42:42,046] [pool-1-thread-10] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: 
   [testng] 01:42:42,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:42:42,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:42,049 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-30_01-42-42.log]
   [testng] 01:42:42,049 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b8ed3e0 - End of configuration.
   [testng] [2024-11-30 01:42:42,253] [pool-1-thread-9] Initializing /data/simon/24_bit_problem.avi: 
   [testng] 01:42:42,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:42:42,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:42,254 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-30_01-42-42.log]
   [testng] 01:42:42,254 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ff3b441 - End of configuration.
   [testng] [2024-11-30 01:42:42,468] [pool-1-thread-8] Initializing /data/qa-11011/M-flow10001.avi: 
   [testng] 01:42:42,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:42:42,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:42,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-30_01-42-42.log]
   [testng] 01:42:42,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@462783ab - End of configuration.
   [testng] [2024-11-30 01:42:42,715] [pool-1-thread-7] Initializing /data/chip_avi/Level002-DB-090.avi: 
   [testng] 01:42:42,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:42:42,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:42,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-30_01-42-42.log]
   [testng] 01:42:42,716 |-INFO in ch.qos.logback.core.sift.SiftProcessor@557de69f - End of configuration.
   [testng] [2024-11-30 01:42:42,869] [pool-1-thread-6] Initializing /data/roger/op9middle40x.lsm movie 3.avi: 
   [testng] 01:42:42,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:42:42,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:42,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-30_01-42-42.log]
   [testng] 01:42:42,871 |-INFO in ch.qos.logback.core.sift.SiftProcessor@120bce1f - End of configuration.
   [testng] [2024-11-30 01:42:43,046] [pool-1-thread-5] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: 
   [testng] 01:42:43,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:42:43,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:43,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-30_01-42-43.log]
   [testng] 01:42:43,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6db7ac6a - End of configuration.
   [testng] [2024-11-30 01:42:43,206] [pool-1-thread-4] Initializing /data/roger/spheroid1-crop.lsm movie.avi: 
   [testng] 01:42:43,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:42:43,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:43,207 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-30_01-42-43.log]
   [testng] 01:42:43,207 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43f54a69 - End of configuration.
   [testng] [2024-11-30 01:42:43,357] [pool-1-thread-3] Initializing /data/curtis/mri-stack-ij-new.avi: 
   [testng] 01:42:43,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:42:43,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:43,358 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-30_01-42-43.log]
   [testng] 01:42:43,358 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a7260bc - End of configuration.
   [testng] [2024-11-30 01:42:43,529] [pool-1-thread-2] Initializing /data/qa-7450/MVI_3610.AVI: 
   [testng] 01:42:43,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:42:43,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:43,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-30_01-42-43.log]
   [testng] 01:42:43,531 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d00ac51 - End of configuration.
   [testng] [2024-11-30 01:42:46,252] [pool-1-thread-12] Initializing /data/prairie/cornea dc and macs.AVI: 
   [testng] [2024-11-30 01:42:46,998] [pool-1-thread-1] Initializing /data/curtis/mri-stack-ij-old.avi: 
   [testng] [2024-11-30 01:42:47,191] [pool-1-thread-11] Initializing /data/chris/APZ04_009.avi: 
   [testng] [2024-11-30 01:42:48,145] [pool-1-thread-7] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: 
   [testng] [2024-11-30 01:42:48,320] [pool-1-thread-3] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: 
   [testng] [2024-11-30 01:42:48,767] [pool-1-thread-5] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: 
   [testng] [2024-11-30 01:42:48,938] [pool-1-thread-10] Initializing /data/william/worm.avi: 
   [testng] [2024-11-30 01:42:49,111] [pool-1-thread-4] Initializing /data/roger/spheroid1.lsm movie.avi: 
   [testng] [2024-11-30 01:42:49,323] [pool-1-thread-9] Initializing /data/jae/20xD_5minfor14h.avi: 
   [testng] [2024-11-30 01:42:49,575] [pool-1-thread-2] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: 
   [testng] [2024-11-30 01:42:49,791] [pool-1-thread-6] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: 
   [testng] [2024-11-30 01:42:49,963] [pool-1-thread-8] Initializing /data/kurt/63x_6um.avi: 
   [testng] [2024-11-30 01:42:51,902] [pool-1-thread-12] Initializing /data/chip_avi/Level004-WA-116.avi: 
   [testng] [2024-11-30 01:42:52,441] [pool-1-thread-10] Initializing /data/qa-5019/nemo-2_10_20.avi: 
   [testng] [2024-11-30 01:42:52,649] [pool-1-thread-1] Initializing /data/kurt/40x_6um_2.avi: 
   [testng] [2024-11-30 01:42:52,900] [pool-1-thread-5] Initializing /data/qa-5019/nemo-2_1_.avi: 
   [testng] [2024-11-30 01:42:53,137] [pool-1-thread-7] Initializing /data/roger/op9middle40x.lsm movie.avi: 
   [testng] [2024-11-30 01:42:53,310] [pool-1-thread-2] Initializing /data/chip_avi/Level003-DB-089.avi: 
   [testng] [2024-11-30 01:42:53,509] [pool-1-thread-6] Initializing /data/roger/op9middle40x.lsm movie 2.avi: 
   [testng] [2024-11-30 01:42:53,693] [pool-1-thread-4] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: 
   [testng] [2024-11-30 01:42:54,731] [pool-1-thread-8] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: 
   [testng] [2024-11-30 01:42:54,982] [pool-1-thread-9] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: 
   [testng] [2024-11-30 01:42:56,538] [pool-1-thread-12] Initializing /data/ascb/TIRF.avi: 
   [testng] [2024-11-30 01:42:57,192] [pool-1-thread-3] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: 
   [testng] [2024-11-30 01:42:57,664] [pool-1-thread-4] Initializing /data/kurt/40x_6um.avi: 
   [testng] [2024-11-30 01:42:57,911] [pool-1-thread-2] Initializing /data/roger/op9middle40x.lsm movie 4.avi: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 2014, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 1 minute 20 seconds
Finished: SUCCESS