Started by upstream project "BIOFORMATS-test-repo" build number 274
originally caused by:
Started by upstream project "Trigger" build number 295
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins11384604227953200141.sh
+ '[' analyze = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_43236_merge_ci -v /uod/idr/repos/curated/analyze:/data -v /uod/idr-scratch/merge-ci/curated/analyze:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 02:45:52,029 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:45:52,030 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 02:45:52,030 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:45:52,031 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:45:52,032 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:45:52,032 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:45:52,032 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:45:52,032 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:45:52,033 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:45:52,033 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:45:52,034 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:45:52,034 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:45:52,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:45:52,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:45:52,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:45:52,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:45:52,217 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:45:52,217 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:45:52,218 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:45:52,218 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:45:52,218 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 02:45:52,219 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 02:45:52,219 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-30 02:45:52,227] [main] java.version = 11.0.16
[testng] 02:45:52,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:45:52,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:52,270 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-30_02-45-52.log]
[testng] 02:45:52,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-11-30 02:45:52,274] [main] testng.directory = /data
[testng] [2024-11-30 02:45:52,274] [main] testng.configDirectory = /config
[testng] [2024-11-30 02:45:52,283] [main] testng.multiplier = 1.0
[testng] [2024-11-30 02:45:52,284] [main] testng.in-memory = false
[testng] [2024-11-30 02:45:52,284] [main] testng.allow-missing = false
[testng] [2024-11-30 02:45:52,284] [main] user.language = en
[testng] [2024-11-30 02:45:52,284] [main] user.country = ${user.country}
[testng] [2024-11-30 02:45:52,284] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-30 02:45:56,981] [main] ----------------------------------------
[testng] [2024-11-30 02:45:56,981] [main] Total files: 21
[testng] [2024-11-30 02:45:56,981] [main] Scan time: 4.697 s (223 ms/file)
[testng] [2024-11-30 02:45:56,981] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-30 02:46:03,764] [pool-1-thread-1] Initializing /data/frans/brodmann.hdr:
[testng] 02:46:03,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:46:03,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:03,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-30_02-46-03.log]
[testng] 02:46:03,768 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5912161d - End of configuration.
[testng] [2024-11-30 02:46:03,986] [pool-1-thread-12] Initializing /data/frans/MR_SEGBRAIN.hdr:
[testng] 02:46:03,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:46:03,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:03,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-30_02-46-03.log]
[testng] 02:46:03,988 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9b28ac4 - End of configuration.
[testng] [2024-11-30 02:46:04,180] [pool-1-thread-11] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1.img.hdr:
[testng] 02:46:04,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:46:04,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:04,181 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-30_02-46-04.log]
[testng] 02:46:04,181 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26fbd922 - End of configuration.
[testng] [2024-11-30 02:46:04,372] [pool-1-thread-10] Initializing /data/frans/CT_WHOLE.hdr:
[testng] 02:46:04,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:46:04,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:04,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-30_02-46-04.log]
[testng] 02:46:04,373 |-INFO in ch.qos.logback.core.sift.SiftProcessor@384b65be - End of configuration.
[testng] [2024-11-30 02:46:04,564] [pool-1-thread-9] Initializing /data/frans/betmask.hdr:
[testng] 02:46:04,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:46:04,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:04,565 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-30_02-46-04.log]
[testng] 02:46:04,565 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3639cf74 - End of configuration.
[testng] [2024-11-30 02:46:04,756] [pool-1-thread-8] Initializing /data/frans/Test Files for Frans/PLA-zm2-16mm_1002_MF_V1.hdr:
[testng] 02:46:04,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:46:04,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:04,757 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-30_02-46-04.log]
[testng] 02:46:04,758 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33e32ac0 - End of configuration.
[testng] [2024-11-30 02:46:05,144] [pool-1-thread-7] Initializing /data/frans/CT_HAND.hdr:
[testng] 02:46:05,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:46:05,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:05,145 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-30_02-46-05.log]
[testng] 02:46:05,145 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62a54eee - End of configuration.
[testng] [2024-11-30 02:46:05,589] [pool-1-thread-6] Initializing /data/frans/CT_FOOT.hdr:
[testng] 02:46:05,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:46:05,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:05,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-30_02-46-05.log]
[testng] 02:46:05,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7548f133 - End of configuration.
[testng] [2024-11-30 02:46:06,019] [pool-1-thread-5] Initializing /data/frans/CT_APERT.hdr:
[testng] 02:46:06,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:46:06,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:06,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-30_02-46-06.log]
[testng] 02:46:06,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a925886 - End of configuration.
[testng] [2024-11-30 02:46:06,438] [pool-1-thread-4] Initializing /data/frans/MR_CHEST.hdr:
[testng] 02:46:06,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:46:06,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:06,439 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-30_02-46-06.log]
[testng] 02:46:06,439 |-INFO in ch.qos.logback.core.sift.SiftProcessor@192f7cfe - End of configuration.
[testng] [2024-11-30 02:46:06,820] [pool-1-thread-3] Initializing /data/frans/aal.hdr:
[testng] 02:46:06,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:46:06,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:06,821 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-30_02-46-06.log]
[testng] 02:46:06,821 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25af6311 - End of configuration.
[testng] [2024-11-30 02:46:07,227] [pool-1-thread-2] Initializing /data/frans/Test Files for Frans/1002-sag-transform-box-est_flip-ord.hdr:
[testng] 02:46:07,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:46:07,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:07,228 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-30_02-46-07.log]
[testng] 02:46:07,228 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c301d30 - End of configuration.
[testng] [2024-11-30 02:46:12,923] [pool-1-thread-11] Initializing /data/frans/Test Files for Frans/F005_1002_MF_SCAN1_stat_brain_fdg_JJ_Volume_Corrected.hdr:
[testng] [2024-11-30 02:46:13,200] [pool-1-thread-8] Initializing /data/frans/CT_CHEST.hdr:
[testng] [2024-11-30 02:46:13,491] [pool-1-thread-9] Initializing /data/frans/m000-MR_CHEST.gif:
[testng] [2024-11-30 02:46:13,563] [pool-1-thread-4] Initializing /data/frans/ch2bet.hdr:
[testng] [2024-11-30 02:46:13,802] [pool-1-thread-12] Initializing /data/frans/ch2.hdr:
[testng] [2024-11-30 02:46:14,047] [pool-1-thread-10] Initializing /data/frans/Test Files for Frans/06-101-mask-40pc2dil.hdr:
[testng] [2024-11-30 02:46:14,310] [pool-1-thread-6] Initializing /data/frans/CT_KNEE.hdr:
[testng] [2024-11-30 02:46:14,538] [pool-1-thread-1] Initializing /data/frans/CT_CRANI.hdr:
[testng] [2024-11-30 02:46:14,751] [pool-1-thread-7] Initializing /data/frans/Test Files for Frans/200-PLA_sansBD_spmT_0005.hdr:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 31 seconds
Finished: SUCCESS