Started by upstream project "BIOFORMATS-test-repo" build number 275
originally caused by:
Started by upstream project "Trigger" build number 296
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins5034620331453656335.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_43298_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:21:25,643 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:21:25,644 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 00:21:25,644 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:21:25,645 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:21:25,645 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:21:25,646 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:21:25,646 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:21:25,646 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:21:25,647 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:21:25,647 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:21:25,647 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:21:25,648 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:21:25,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:21:25,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:21:25,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:21:25,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:21:25,845 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:21:25,845 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:21:25,845 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:21:25,846 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:21:25,846 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 00:21:25,846 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 00:21:25,846 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 199 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-01 00:21:25,855] [main] java.version = 17.0.2
[testng] 00:21:25,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:21:25,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:21:25,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-01_00-21-25.log]
[testng] 00:21:25,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-12-01 00:21:25,916] [main] testng.directory = /data
[testng] [2024-12-01 00:21:25,916] [main] testng.configDirectory = /config
[testng] [2024-12-01 00:21:25,928] [main] testng.multiplier = 1.0
[testng] [2024-12-01 00:21:25,929] [main] testng.in-memory = false
[testng] [2024-12-01 00:21:25,929] [main] testng.allow-missing = false
[testng] [2024-12-01 00:21:25,929] [main] user.language = en
[testng] [2024-12-01 00:21:25,929] [main] user.country = ${user.country}
[testng] [2024-12-01 00:21:25,929] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-01 00:21:52,849] [main] ----------------------------------------
[testng] [2024-12-01 00:21:52,849] [main] Total files: 315
[testng] [2024-12-01 00:21:52,849] [main] Scan time: 26.92 s (85 ms/file)
[testng] [2024-12-01 00:21:52,849] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 192 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-01 00:32:00,473] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] 00:32:00,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:32:00,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:00,474 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-01_00-32-00.log]
[testng] 00:32:00,475 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e6c8f96 - End of configuration.
[testng] [2024-12-01 00:32:00,672] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] 00:32:00,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:32:00,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:00,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-01_00-32-00.log]
[testng] 00:32:00,673 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d9bdd7d - End of configuration.
[testng] [2024-12-01 00:32:01,240] [pool-1-thread-11] Initializing /data/public/etienne/venus stack.oir:
[testng] 00:32:01,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:32:01,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:01,241 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-01_00-32-01.log]
[testng] 00:32:01,242 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2574869d - End of configuration.
[testng] [2024-12-01 00:32:01,956] [pool-1-thread-10] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] 00:32:01,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:32:01,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:01,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-01_00-32-01.log]
[testng] 00:32:01,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@796fa84b - End of configuration.
[testng] [2024-12-01 00:32:02,393] [pool-1-thread-9] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] 00:32:02,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:32:02,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:02,394 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-01_00-32-02.log]
[testng] 00:32:02,395 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4adec487 - End of configuration.
[testng] [2024-12-01 00:32:02,771] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] 00:32:02,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:32:02,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:02,771 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-01_00-32-02.log]
[testng] 00:32:02,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@94a9c32 - End of configuration.
[testng] [2024-12-01 00:32:03,087] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] 00:32:03,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:32:03,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:03,088 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-01_00-32-03.log]
[testng] 00:32:03,088 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a8eaf34 - End of configuration.
[testng] [2024-12-01 00:32:03,363] [pool-1-thread-6] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] 00:32:03,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:32:03,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:03,364 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-01_00-32-03.log]
[testng] 00:32:03,364 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62e48ca7 - End of configuration.
[testng] [2024-12-01 00:32:03,913] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] 00:32:03,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:32:03,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:03,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-01_00-32-03.log]
[testng] 00:32:03,914 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f807767 - End of configuration.
[testng] [2024-12-01 00:32:04,269] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] 00:32:04,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:32:04,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:04,270 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-01_00-32-04.log]
[testng] 00:32:04,270 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cff0c00 - End of configuration.
[testng] [2024-12-01 00:32:04,694] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir:
[testng] 00:32:04,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:32:04,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:04,695 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-01_00-32-04.log]
[testng] 00:32:04,695 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f6325d - End of configuration.
[testng] [2024-12-01 00:32:04,997] [pool-1-thread-2] Initializing /data/qa-17922/example_multipart.oir:
[testng] 00:32:04,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:32:04,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:04,998 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-01_00-32-04.log]
[testng] 00:32:04,998 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b2cd835 - End of configuration.
[testng] [2024-12-01 00:32:31,419] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-12-01 00:32:31,664] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-12-01 00:32:32,081] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-12-01 00:32:32,608] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-12-01 00:32:32,845] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-12-01 00:32:33,197] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] [2024-12-01 00:32:33,513] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-12-01 00:32:33,791] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-12-01 00:32:34,156] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-12-01 00:32:36,445] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-12-01 00:32:36,694] [pool-1-thread-4] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] [2024-12-01 00:32:37,702] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] [2024-12-01 00:32:37,985] [pool-1-thread-12] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] [2024-12-01 00:32:38,800] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-12-01 00:32:39,312] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-12-01 00:32:39,627] [pool-1-thread-7] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] [2024-12-01 00:32:40,070] [pool-1-thread-3] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] [2024-12-01 00:32:40,284] [pool-1-thread-11] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-12-01 00:32:40,535] [pool-1-thread-10] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng] [2024-12-01 00:32:40,939] [pool-1-thread-6] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-12-01 00:32:43,512] [pool-1-thread-9] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-12-01 00:32:43,892] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-12-01 00:32:44,538] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-12-01 00:32:45,418] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] [2024-12-01 00:32:45,668] [pool-1-thread-7] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-12-01 00:32:45,932] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-12-01 00:32:46,264] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-12-01 00:32:46,826] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-12-01 00:32:48,786] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-12-01 00:32:49,123] [pool-1-thread-8] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-12-01 00:32:49,479] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] [2024-12-01 00:32:49,841] [pool-1-thread-5] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-12-01 00:32:50,388] [pool-1-thread-5] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-12-01 00:32:50,756] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-12-01 00:32:51,071] [pool-1-thread-7] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-12-01 00:32:51,801] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-12-01 00:32:52,165] [pool-1-thread-10] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2024-12-01 00:32:53,950] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-12-01 00:32:54,748] [pool-1-thread-12] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-12-01 00:32:55,089] [pool-1-thread-1] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-12-01 00:32:55,583] [pool-1-thread-11] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-12-01 00:32:56,051] [pool-1-thread-5] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] [2024-12-01 00:32:56,575] [pool-1-thread-7] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] [2024-12-01 00:32:56,987] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] [2024-12-01 00:32:58,861] [pool-1-thread-10] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] [2024-12-01 00:32:59,855] [pool-1-thread-9] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-12-01 00:33:00,698] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-12-01 00:33:01,035] [pool-1-thread-11] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-12-01 00:33:01,792] [pool-1-thread-1] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-12-01 00:33:02,421] [pool-1-thread-5] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-12-01 00:33:02,683] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-12-01 00:33:02,914] [pool-1-thread-7] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-12-01 00:33:03,972] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] [2024-12-01 00:33:04,639] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2024-12-01 00:33:05,167] [pool-1-thread-12] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-12-01 00:33:05,559] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] [2024-12-01 00:33:06,514] [pool-1-thread-5] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-12-01 00:33:07,138] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] [2024-12-01 00:33:07,596] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-12-01 00:33:08,351] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] [2024-12-01 00:33:08,727] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] [2024-12-01 00:33:09,118] [pool-1-thread-10] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-12-01 00:33:09,468] [pool-1-thread-12] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] [2024-12-01 00:33:09,804] [pool-1-thread-11] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-12-01 00:33:10,374] [pool-1-thread-6] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-12-01 00:33:10,547] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-12-01 00:33:12,201] [pool-1-thread-5] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-12-01 00:33:12,570] [pool-1-thread-7] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] [2024-12-01 00:33:12,810] [pool-1-thread-9] Initializing /data/qa-17270/alexa488.oir:
[testng] [2024-12-01 00:33:13,157] [pool-1-thread-8] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-12-01 00:33:14,266] [pool-1-thread-11] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-12-01 00:33:14,552] [pool-1-thread-6] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-12-01 00:33:15,022] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir:
[testng] [2024-12-01 00:33:15,395] [pool-1-thread-1] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-12-01 00:33:15,741] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-12-01 00:33:16,509] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] [2024-12-01 00:33:17,320] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-12-01 00:33:18,828] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-12-01 00:33:20,093] [pool-1-thread-1] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-12-01 00:33:20,666] [pool-1-thread-4] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-12-01 00:33:21,971] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-12-01 00:33:23,703] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] [2024-12-01 00:33:27,687] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-12-01 00:33:28,196] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] [2024-12-01 00:33:29,198] [pool-1-thread-4] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir:
[testng] [2024-12-01 00:33:29,664] [pool-1-thread-5] Initializing /data/qa-17270/stack1.ome.tif:
[testng] [2024-12-01 00:33:31,664] [pool-1-thread-3] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-12-01 00:33:32,915] [pool-1-thread-6] Initializing /data/qa-17270/image1.oir:
[testng] [2024-12-01 00:33:33,702] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-12-01 00:33:34,263] [pool-1-thread-12] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-12-01 00:33:35,227] [pool-1-thread-5] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-12-01 00:33:40,331] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-12-01 00:33:42,870] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-12-01 00:33:43,440] [pool-1-thread-10] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-12-01 00:33:43,990] [pool-1-thread-7] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-12-01 00:33:46,218] [pool-1-thread-12] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-12-01 00:33:46,785] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-12-01 00:33:47,089] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-12-01 00:33:47,452] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] [2024-12-01 00:33:49,364] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] [2024-12-01 00:33:49,891] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-12-01 00:33:50,730] [pool-1-thread-9] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] [2024-12-01 00:33:52,777] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-12-01 00:33:53,389] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] [2024-12-01 00:33:54,821] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] [2024-12-01 00:33:56,522] [pool-1-thread-4] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] [2024-12-01 00:34:48,420] [pool-1-thread-8] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2024-12-01 00:34:49,419] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-12-01 00:34:50,625] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-12-01 00:34:51,344] [pool-1-thread-10] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] [2024-12-01 00:34:54,010] [pool-1-thread-12] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2024-12-01 00:34:56,782] [pool-1-thread-1] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-12-01 00:35:00,018] [pool-1-thread-8] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] [2024-12-01 00:35:02,687] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] [2024-12-01 00:35:04,068] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-12-01 00:35:05,311] [pool-1-thread-10] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-12-01 00:35:06,753] [pool-1-thread-1] Initializing /data/qa-17919/f10187.oir:
[testng] [2024-12-01 00:35:29,755] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-12-01 00:35:31,216] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-12-01 00:35:33,359] [pool-1-thread-9] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] [2024-12-01 00:35:34,489] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] [2024-12-01 00:35:37,842] [pool-1-thread-8] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-12-01 00:35:41,946] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-12-01 00:35:44,256] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] [2024-12-01 00:35:49,011] [pool-1-thread-8] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-12-01 00:35:50,231] [pool-1-thread-7] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-12-01 00:35:53,955] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-12-01 00:35:54,593] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-12-01 00:35:55,057] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] [2024-12-01 00:35:56,179] [pool-1-thread-7] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-12-01 00:36:00,321] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-12-01 00:36:01,874] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-12-01 00:36:03,232] [pool-1-thread-3] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-12-01 00:36:04,294] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] [2024-12-01 00:36:05,771] [pool-1-thread-7] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-12-01 00:36:09,232] [pool-1-thread-8] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] [2024-12-01 00:36:11,805] [pool-1-thread-3] Initializing /data/qa-17270/stack1.oir:
[testng] [2024-12-01 00:36:13,902] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-12-01 00:36:15,233] [pool-1-thread-7] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-12-01 00:36:17,843] [pool-1-thread-8] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-12-01 00:36:22,749] [pool-1-thread-7] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-12-01 00:36:24,282] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-12-01 00:36:25,359] [pool-1-thread-6] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-12-01 00:36:27,316] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-12-01 00:36:29,186] [pool-1-thread-7] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-12-01 00:36:31,284] [pool-1-thread-10] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-12-01 00:36:33,887] [pool-1-thread-2] Initializing /data/cudmore/20190401__0005.oir:
[testng] [2024-12-01 00:36:39,326] [pool-1-thread-8] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-12-01 00:36:40,105] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-12-01 00:36:41,054] [pool-1-thread-6] Initializing /data/olympus/XYZt.oir:
[testng] [2024-12-01 00:36:43,517] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-12-01 00:36:46,499] [pool-1-thread-7] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-12-01 00:36:47,776] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-12-01 00:36:50,365] [pool-1-thread-3] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-12-01 00:36:50,935] [pool-1-thread-8] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-12-01 00:36:55,892] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-12-01 00:36:59,367] [pool-1-thread-7] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-12-01 00:37:28,844] [pool-1-thread-10] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-12-01 00:37:30,438] [pool-1-thread-6] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-12-01 00:37:32,939] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] [2024-12-01 00:37:36,423] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-12-01 00:37:39,697] [pool-1-thread-10] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] [2024-12-01 00:37:42,795] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-12-01 00:37:48,296] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng] [2024-12-01 00:37:49,199] [pool-1-thread-2] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] [2024-12-01 00:37:54,439] [pool-1-thread-10] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2024-12-01 00:37:55,157] [pool-1-thread-6] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-12-01 00:37:55,587] [pool-1-thread-3] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-12-01 00:37:59,983] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-12-01 00:38:02,103] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-12-01 00:38:02,646] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] [2024-12-01 00:38:08,001] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2024-12-01 00:38:08,972] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] [2024-12-01 00:38:10,336] [pool-1-thread-8] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-12-01 00:38:17,287] [pool-1-thread-10] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] [2024-12-01 00:38:20,585] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-12-01 00:38:21,753] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info:
[testng] [2024-12-01 00:38:30,317] [pool-1-thread-1] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2024-12-01 00:38:34,029] [pool-1-thread-10] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] [2024-12-01 00:38:34,694] [pool-1-thread-2] Initializing /data/qa-17335/1.oir:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 10176, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 48 minutes 49 seconds
Finished: SUCCESS