Started by upstream project "BIOFORMATS-test-repo" build number 275
originally caused by:
Started by upstream project "Trigger" build number 296
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins10048506892677815944.sh
+ '[' visitech = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_43304_merge_ci -v /uod/idr/repos/curated/visitech:/data -v /uod/idr-scratch/merge-ci/curated/visitech:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:24:35,512 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:24:35,514 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 00:24:35,514 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:24:35,515 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:24:35,515 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:24:35,516 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:24:35,516 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:24:35,516 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:24:35,516 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:24:35,517 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:24:35,517 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:24:35,518 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:24:35,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:24:35,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:24:35,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:24:35,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:24:35,720 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:24:35,720 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:24:35,720 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:24:35,720 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:24:35,721 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 00:24:35,721 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 00:24:35,721 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 205 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-01 00:24:35,731] [main] java.version = 17.0.2
[testng] 00:24:35,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:24:35,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:24:35,778 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-01_00-24-35.log]
[testng] 00:24:35,779 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-12-01 00:24:35,781] [main] testng.directory = /data
[testng] [2024-12-01 00:24:35,782] [main] testng.configDirectory = /config
[testng] [2024-12-01 00:24:35,791] [main] testng.multiplier = 1.0
[testng] [2024-12-01 00:24:35,791] [main] testng.in-memory = false
[testng] [2024-12-01 00:24:35,792] [main] testng.allow-missing = false
[testng] [2024-12-01 00:24:35,792] [main] user.language = en
[testng] [2024-12-01 00:24:35,792] [main] user.country = ${user.country}
[testng] [2024-12-01 00:24:35,792] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-01 00:24:50,637] [main] ----------------------------------------
[testng] [2024-12-01 00:24:50,637] [main] Total files: 45
[testng] [2024-12-01 00:24:50,637] [main] Scan time: 14.845 s (329 ms/file)
[testng] [2024-12-01 00:24:50,637] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-01 00:25:15,814] [pool-1-thread-1] Initializing /data/brian/ScreenShot.jpg:
[testng] 00:25:15,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:25:15,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:15,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-01_00-25-15.log]
[testng] 00:25:15,817 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dec913c - End of configuration.
[testng] [2024-12-01 00:25:15,988] [pool-1-thread-12] Initializing /data/kazem/noname Report.html:
[testng] 00:25:15,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:25:15,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:15,990 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-01_00-25-15.log]
[testng] 00:25:15,990 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dc0cf8a - End of configuration.
[testng] [2024-12-01 00:25:16,424] [pool-1-thread-11] Initializing /data/brian/060916-01 Report.html:
[testng] 00:25:16,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:25:16,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:16,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-01_00-25-16.log]
[testng] 00:25:16,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@473d2ad1 - End of configuration.
[testng] [2024-12-01 00:25:16,732] [pool-1-thread-10] Initializing /data/scott/2 channel_Z_timelaps/525.tif:
[testng] 00:25:16,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:25:16,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:16,733 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-01_00-25-16.log]
[testng] 00:25:16,733 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27f97de7 - End of configuration.
[testng] [2024-12-01 00:25:18,387] [pool-1-thread-9] Initializing /data/brian/060916-01-561.tif:
[testng] 00:25:18,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:25:18,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:18,388 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-01_00-25-18.log]
[testng] 00:25:18,388 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6aebed13 - End of configuration.
[testng] [2024-12-01 00:25:20,216] [pool-1-thread-8] Initializing /data/oliver/20x/488 Report.html:
[testng] 00:25:20,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:25:20,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:20,217 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-01_00-25-20.log]
[testng] 00:25:20,218 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f8291b7 - End of configuration.
[testng] [2024-12-01 00:25:21,007] [pool-1-thread-7] Initializing /data/scott/2 Channel z timelaps original/2 channel_Z_timelaps Report.html:
[testng] 00:25:21,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:25:21,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:21,008 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-01_00-25-21.log]
[testng] 00:25:21,009 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17a9f338 - End of configuration.
[testng] [2024-12-01 00:25:21,352] [pool-1-thread-6] Initializing /data/scott/2 Channel Z timelaps repeat/2 channel_Z_timelaps 2 Report.html:
[testng] 00:25:21,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:25:21,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:21,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-01_00-25-21.log]
[testng] 00:25:21,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50873eb8 - End of configuration.
[testng] [2024-12-01 00:25:21,702] [pool-1-thread-5] Initializing /data/brian/060916-01-488.tif:
[testng] 00:25:21,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:25:21,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:21,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-01_00-25-21.log]
[testng] 00:25:21,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5769b13d - End of configuration.
[testng] [2024-12-01 00:25:23,284] [pool-1-thread-4] Initializing /data/scott/2 channel_Z_timelaps/2 channel_Z_timelaps Report.html:
[testng] 00:25:23,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:25:23,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:23,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-01_00-25-23.log]
[testng] 00:25:23,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fc7cc1 - End of configuration.
[testng] [2024-12-01 00:25:23,667] [pool-1-thread-3] Initializing /data/oliver/20x/491 Report.html:
[testng] 00:25:23,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:25:23,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:23,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-01_00-25-23.log]
[testng] 00:25:23,669 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f4ba08b - End of configuration.
[testng] [2024-12-01 00:25:24,524] [pool-1-thread-2] Initializing /data/scott/2 Channel z no timelaps/2 chanel z no time Report.html:
[testng] 00:25:24,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:25:24,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:24,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-01_00-25-24.log]
[testng] 00:25:24,525 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c168b0d - End of configuration.
[testng] [2024-12-01 00:25:29,878] [pool-1-thread-1] Initializing /data/scott/2 channel z 6 xy stage positions/2 chanel z 3x2 GRID Report.html:
[testng] [2024-12-01 00:25:32,679] [pool-1-thread-10] Initializing /data/scott/2 channel_Z_timelaps/597.tif:
[testng] [2024-12-01 00:25:34,683] [pool-1-thread-9] Initializing /data/brian/070613reA1_2 Report.html:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 795, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 34 seconds
Finished: SUCCESS