Started by upstream project "BIOFORMATS-test-repo" build number 275 originally caused by: Started by upstream project "Trigger" build number 296 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins10477114853869964951.sh + '[' nd2 = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_43345_merge_ci -v /uod/idr/repos/curated/nd2:/data -v /uod/idr-scratch/merge-ci/curated/nd2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:48:06,162 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:48:06,163 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:48:06,163 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:48:06,164 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:48:06,164 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:48:06,165 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:48:06,165 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:48:06,165 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:48:06,165 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:48:06,166 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:48:06,166 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:48:06,166 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:48:06,331 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:48:06,331 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:48:06,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:48:06,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:48:06,359 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:48:06,359 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:48:06,359 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:48:06,360 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:48:06,360 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:48:06,361 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:48:06,361 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-01 00:48:06,370] [main] java.version = 17.0.2 [testng] 00:48:06,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:48:06,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:06,414 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-01_00-48-06.log] [testng] 00:48:06,415 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-01 00:48:06,417] [main] testng.directory = /data [testng] [2024-12-01 00:48:06,417] [main] testng.configDirectory = /config [testng] [2024-12-01 00:48:06,426] [main] testng.multiplier = 1.0 [testng] [2024-12-01 00:48:06,427] [main] testng.in-memory = false [testng] [2024-12-01 00:48:06,427] [main] testng.allow-missing = false [testng] [2024-12-01 00:48:06,427] [main] user.language = en [testng] [2024-12-01 00:48:06,427] [main] user.country = ${user.country} [testng] [2024-12-01 00:48:06,427] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-01 00:49:55,695] [main] ---------------------------------------- [testng] [2024-12-01 00:49:55,695] [main] Total files: 275 [testng] [2024-12-01 00:49:55,696] [main] Scan time: 109.268 s (397 ms/file) [testng] [2024-12-01 00:49:55,696] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 247 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-01 00:59:49,831] [pool-1-thread-1] Initializing /data/michael/MCammer Nikon file opens in wrong order.nd2: [testng] 00:59:49,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:59:49,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:49,833 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-01_00-59-49.log] [testng] 00:59:49,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@729ad14 - End of configuration. [testng] [2024-12-01 00:59:50,929] [pool-1-thread-12] Initializing /data/michael/metadata only reported for last channel.nd2: [testng] 00:59:50,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:59:50,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:50,931 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-01_00-59-50.log] [testng] 00:59:50,932 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44522d8b - End of configuration. [testng] [2024-12-01 00:59:51,528] [pool-1-thread-11] Initializing /data/qa-29438/chip1_channel1_each-pixel.nd2: [testng] 00:59:51,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:59:51,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:51,529 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-01_00-59-51.log] [testng] 00:59:51,530 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2df49d98 - End of configuration. [testng] [2024-12-01 00:59:51,990] [pool-1-thread-10] Initializing /data/venu/eight_160807_control cells_4D.tif: [testng] 00:59:51,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:59:51,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:51,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-01_00-59-51.log] [testng] 00:59:51,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f7efda1 - End of configuration. [testng] [2024-12-01 00:59:52,865] [pool-1-thread-9] Initializing /data/michael/Opens ok with LOCI.nd2: [testng] 00:59:52,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:59:52,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:52,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-01_00-59-52.log] [testng] 00:59:52,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@735985c4 - End of configuration. [testng] [2024-12-01 00:59:53,469] [pool-1-thread-8] Initializing /data/qa-4196/120123 10h timelapse after incubator set up 1xy 1t.nd2: [testng] 00:59:53,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:59:53,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:53,470 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-01_00-59-53.log] [testng] 00:59:53,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a8ef8 - End of configuration. [testng] [2024-12-01 00:59:53,990] [pool-1-thread-7] Initializing /data/qa-7799/Patient 67 from 20130812.nd2: [testng] 00:59:53,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:59:53,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:53,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-01_00-59-53.log] [testng] 00:59:53,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a1ab702 - End of configuration. [testng] [2024-12-01 00:59:54,565] [pool-1-thread-6] Initializing /data/strand/Serie040.nd2: [testng] 00:59:54,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:59:54,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:54,566 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-01_00-59-54.log] [testng] 00:59:54,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@212acaac - End of configuration. [testng] [2024-12-01 00:59:55,184] [pool-1-thread-5] Initializing /data/qa-17099/upSIAPdownNT002.nd2: [testng] 00:59:55,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:59:55,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:55,185 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-01_00-59-55.log] [testng] 00:59:55,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d1e200a - End of configuration. [testng] [2024-12-01 00:59:55,871] [pool-1-thread-4] Initializing /data/public/aryeh/multipoint.nd2: [testng] 00:59:55,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:59:55,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:55,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-01_00-59-55.log] [testng] 00:59:55,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d9e2b44 - End of configuration. [testng] [2024-12-01 00:59:56,896] [pool-1-thread-3] Initializing /data/gaurav/A1.nd2: [testng] 00:59:56,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:59:56,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:56,897 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-01_00-59-56.log] [testng] 00:59:56,897 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fb93dd7 - End of configuration. [testng] [2024-12-01 00:59:57,533] [pool-1-thread-2] Initializing /data/qa-7906/2591A1.jp2: [testng] 00:59:57,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:59:57,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:57,533 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-01_00-59-57.log] [testng] 00:59:57,534 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d76610a - End of configuration. [testng] [2024-12-01 01:00:03,634] [pool-1-thread-11] Initializing /data/colin/20110729_beads_001.nd2: [testng] [2024-12-01 01:00:04,497] [pool-1-thread-3] Initializing /data/venu/nd-three_channel-6.nd2: [testng] [2024-12-01 01:00:05,369] [pool-1-thread-5] Initializing /data/public/aryeh/por003.nd2: [testng] [2024-12-01 01:00:05,850] [pool-1-thread-12] Initializing /data/qa-27812/Deconvolved_32Float.nd2: [testng] [2024-12-01 01:00:06,296] [pool-1-thread-6] Initializing /data/colin/20110729_beads_001_xy1.nd2: [testng] [2024-12-01 01:00:07,106] [pool-1-thread-8] Initializing /data/qa-7983/control_test_200314001.nd2: [testng] [2024-12-01 01:00:07,635] [pool-1-thread-9] Initializing /data/kevin/100nm_coat_1.nd2: [testng] [2024-12-01 01:00:08,743] [pool-1-thread-10] Initializing /data/michael/opens_ok.nd2: [testng] [2024-12-01 01:00:13,310] [pool-1-thread-12] Initializing /data/brian/MDCK002.nd2: [testng] [2024-12-01 01:00:14,456] [pool-1-thread-6] Initializing /data/marek/NIS4_fails_to_open_correctly.nd2: [testng] [2024-12-01 01:00:15,201] [pool-1-thread-3] Initializing /data/public/jonas/header_test2.nd2: [testng] [2024-12-01 01:00:16,304] [pool-1-thread-8] Initializing /data/david/NDSequence013.nd2: [testng] [2024-12-01 01:00:17,011] [pool-1-thread-5] Initializing /data/stefanie/nd026_xy1.nd2: [testng] [2024-12-01 01:00:18,562] [pool-1-thread-11] Initializing /data/pete/psf_bead_theoretical.nd2: [testng] [2024-12-01 01:00:19,427] [pool-1-thread-1] Initializing /data/jcb/201101064/Fig 8B imp beta-BPM MaxIP.nd2: [testng] [2024-12-01 01:00:20,522] [pool-1-thread-12] Initializing /data/michael/TEMPmcammer.nd2: [testng] [2024-12-01 01:00:21,418] [pool-1-thread-9] Initializing /data/qa-7454/Dapi PFA Eukitt 1r 001.nd2: [testng] [2024-12-01 01:00:22,500] [pool-1-thread-10] Initializing /data/venu/two_160807_control cells_4D.tif: [testng] [2024-12-01 01:00:23,425] [pool-1-thread-3] Initializing /data/public/aryeh/but3_cont2002.nd2: [testng] [2024-12-01 01:00:23,951] [pool-1-thread-6] Initializing /data/sara/Ex9 ALADIN WT KO KI 31_07_2013.nd2: [testng] [2024-12-01 01:00:25,262] [pool-1-thread-2] Initializing /data/public/jonas/qa-7534/130606_JCC719_003.nd2: [testng] [2024-12-01 01:00:26,643] [pool-1-thread-11] Initializing /data/colin/20110729_beads_001_xy2.nd2: [testng] [2024-12-01 01:00:28,080] [pool-1-thread-5] Initializing /data/jason/CapturedBF2.nd2: [testng] [2024-12-01 01:00:28,704] [pool-1-thread-8] Initializing /data/stephen/LOCI_screen_dump.jpg: [testng] [2024-12-01 01:00:30,433] [pool-1-thread-1] Initializing /data/karsten/100720104_TestglasSchott_MM63_C16h_SYTO.nd2: [testng] [2024-12-01 01:00:32,064] [pool-1-thread-8] Initializing /data/dan/120109_test.nd2: [testng] [2024-12-01 01:00:32,634] [pool-1-thread-10] Initializing /data/tom/512x512x11 1um step.nd2: [testng] [2024-12-01 01:00:33,715] [pool-1-thread-11] Initializing /data/jennet/2D001_crop.nd2: [testng] [2024-12-01 01:00:34,342] [pool-1-thread-5] Initializing /data/michael/mcammer BUT THIS FILE OPENS FINE.nd2: [testng] [2024-12-01 01:00:35,224] [pool-1-thread-4] Initializing /data/dan-dickinson/141_mChCtrl_002.nd2: [testng] [2024-12-01 01:00:35,792] [pool-1-thread-7] Initializing /data/qa-29043/Actin-Polymerization-10min-2s.nd2: [testng] [2024-12-01 01:00:36,455] [pool-1-thread-9] Initializing /data/chris/228 and 340.nd2: [testng] [2024-12-01 01:00:37,388] [pool-1-thread-2] Initializing /data/matt/Final merge.nd2: [testng] [2024-12-01 01:00:38,056] [pool-1-thread-12] Initializing /data/venu/nd-two_channel-2.nd2: [testng] [2024-12-01 01:00:40,612] [pool-1-thread-10] Initializing /data/josh/072007h.nd2: [testng] [2024-12-01 01:00:41,201] [pool-1-thread-8] Initializing /data/leon/WellA1_Seq0000.nd2: [testng] [2024-12-01 01:00:42,858] [pool-1-thread-11] Initializing /data/public/aryeh/b16_pdtB+y50__crop.nd2: [testng] [2024-12-01 01:00:44,759] [pool-1-thread-4] Initializing /data/imagesc-76438/Slide2-20-1_Region0000_ChannelBrightfield_Seq0002.nd2: [testng] [2024-12-01 01:00:48,229] [pool-1-thread-5] Initializing /data/imagesc-76438/Slide2-20-1_Region0001_ChannelBrightfield_Seq0003.nd2: [testng] [2024-12-01 01:00:52,226] [pool-1-thread-7] Initializing /data/kevin/test3.nd2: [testng] [2024-12-01 01:00:54,116] [pool-1-thread-12] Initializing /data/public/aryeh/rfp_h2a_cells_02.nd2: [testng] [2024-12-01 01:01:00,978] [pool-1-thread-9] Initializing /data/fiji-655/01.nd2: [testng] [2024-12-01 01:01:01,527] [pool-1-thread-2] Initializing /data/michael/MCammer Nikon file that wont open.nd2: [testng] [2024-12-01 01:01:02,007] [pool-1-thread-10] Initializing /data/public/jonas/header_test1.nd2: [testng] [2024-12-01 01:01:03,216] [pool-1-thread-8] Initializing /data/public/jonas/divisionByZero/290110.tranMgc005cr.nd2: [testng] [2024-12-01 01:01:05,691] [pool-1-thread-7] Initializing /data/unknown_fiji_upload/Day_2_A4_10x_Fluor_Z_Stack.nd2: [testng] [2024-12-01 01:01:07,803] [pool-1-thread-2] Initializing /data/yanmei/snapcells-vps2.nd2: [testng] [2024-12-01 01:01:08,368] [pool-1-thread-9] Initializing /data/christian/CW002_3_rfp.nd2: [testng] [2024-12-01 01:01:08,980] [pool-1-thread-10] Initializing /data/qa-28060/20191023-htirf-888.nd2: [testng] [2024-12-01 01:01:10,987] [pool-1-thread-7] Initializing /data/katherina/120312_488HP_Convallaria nueva.nd2: [testng] [2024-12-01 01:01:14,046] [pool-1-thread-2] Initializing /data/qa-4958/556_t2.nd2: [testng] [2024-12-01 01:01:14,696] [pool-1-thread-10] Initializing /data/hallie/RNAi Plate 4.nd2: [testng] [2024-12-01 01:01:15,899] [pool-1-thread-3] Initializing /data/qa-11064/t2_mp8_z4_ch3_.nd2: [testng] [2024-12-01 01:01:16,829] [pool-1-thread-9] Initializing /data/public/aryeh/4_2_1_cont_NoMR001.nd2: [testng] [2024-12-01 01:01:27,052] [pool-1-thread-6] Initializing /data/qa-7906/2591B1.jp2: [testng] [2024-12-01 01:01:28,155] [pool-1-thread-7] Initializing /data/public/jonas/512c/nikonTest_two.nd2: [testng] [2024-12-01 01:01:29,058] [pool-1-thread-8] Initializing /data/katherina/120312_488HP_Convallaria nueva - C=1.tif: [testng] [2024-12-01 01:01:30,184] [pool-1-thread-2] Initializing /data/qa-7906/2591A.jp2: [testng] [2024-12-01 01:01:38,189] [pool-1-thread-8] Initializing /data/qa-11064/t2_mp8_z4_ch3__channelsDeleted.nd2: [testng] [2024-12-01 01:01:39,241] [pool-1-thread-3] Initializing /data/rehan/P128.nd2: [testng] [2024-12-01 01:01:41,357] [pool-1-thread-7] Initializing /data/gh-2955/cluster.nd2: [testng] [2024-12-01 01:01:44,511] [pool-1-thread-1] Initializing /data/nadya/Capture1.PNG: [testng] [2024-12-01 01:01:45,612] [pool-1-thread-7] Initializing /data/public/aryeh/4_con_2_1_cot002.nd2: [testng] [2024-12-01 01:01:58,861] [pool-1-thread-1] Initializing /data/imagesc-76438/Slide2-20-2_Region0001_ChannelBrightfield_Seq0011.nd2: [testng] [2024-12-01 01:02:32,551] [pool-1-thread-8] Initializing /data/public/jonas/2.nd2: [testng] 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[pool-1-thread-2] Initializing /data/venu/nd-two_channel-0.nd2: [testng] [2024-12-01 01:05:32,890] [pool-1-thread-9] Initializing /data/venu/nd-three_channel-3.nd2: [testng] [2024-12-01 01:05:35,420] [pool-1-thread-12] Initializing /data/yarden/Session26_Well1_10x.nd2: [testng] [2024-12-01 01:05:37,837] [pool-1-thread-5] Initializing /data/public/aryeh/old_cells_02.nd2: [testng] [2024-12-01 01:05:39,346] [pool-1-thread-4] Initializing /data/richard/KitWv#67.avi: [testng] [2024-12-01 01:05:41,786] [pool-1-thread-6] Initializing /data/stefanie/nd026_xy3.nd2: [testng] [2024-12-01 01:05:42,680] [pool-1-thread-3] Initializing /data/qa-29035/Seq0000.nd2: [testng] [2024-12-01 01:05:43,524] [pool-1-thread-10] Initializing /data/kevin/DD100liposomes_1.nd2: [testng] [2024-12-01 01:05:45,217] [pool-1-thread-7] Initializing /data/michael/opened skewed - C=0.tif: [testng] [2024-12-01 01:05:47,554] [pool-1-thread-2] Initializing /data/kyle-vrtis/180627 1e Cas9 GINS collapse lag lag.nd2: [testng] [2024-12-01 01:05:49,769] [pool-1-thread-8] Initializing /data/michael/frap0041 00X 1Xeyepiece 15sec Cy5 ICAM TIRF.nd2: [testng] [2024-12-01 01:05:52,285] [pool-1-thread-5] Initializing /data/public/aryeh/qa-9507/control003.nd2: [testng] [2024-12-01 01:05:55,244] [pool-1-thread-9] Initializing /data/rehan/P128 wt pg bouton.ics: [testng] [2024-12-01 01:05:56,197] [pool-1-thread-10] Initializing /data/josh/CGE1.nd2: [testng] [2024-12-01 01:05:56,993] [pool-1-thread-6] Initializing /data/christian/missing-dimensions-test.nd2: [testng] [2024-12-01 01:05:57,967] [pool-1-thread-3] Initializing /data/public/jonas/512c/nikonTest_1.nd2: [testng] [2024-12-01 01:06:00,882] [pool-1-thread-7] Initializing /data/public/jonas/512c/wtf_alignment.nd2: [testng] [2024-12-01 01:06:03,298] [pool-1-thread-6] Initializing /data/venu/nd-three_channel-2.nd2: [testng] [2024-12-01 01:06:04,350] [pool-1-thread-10] Initializing /data/ye-chen/LOCI_YeChen_Swinburne.nd2: [testng] [2024-12-01 01:06:05,434] [pool-1-thread-8] Initializing /data/kyle/F301.nd2: [testng] [2024-12-01 01:06:09,078] [pool-1-thread-3] Initializing /data/tiao/WellC03_Seq0000.nd2: [testng] [2024-12-01 01:06:11,403] [pool-1-thread-9] Initializing /data/michael/50um_004 skewed.nd2: [testng] [2024-12-01 01:06:12,290] [pool-1-thread-2] Initializing /data/qa-7908/020514 SH003.nd2: [testng] [2024-12-01 01:06:13,314] [pool-1-thread-7] Initializing /data/venu/five_160807_control cells_4D.tif: [testng] [2024-12-01 01:06:15,105] [pool-1-thread-6] Initializing /data/henry/large image.nd2: [testng] [2024-12-01 01:06:16,816] [pool-1-thread-10] Initializing /data/qa-11064/t1_mp8_z4_chOff_005.nd2: [testng] [2024-12-01 01:06:21,421] [pool-1-thread-3] Initializing /data/nadya/flat.nd2: [testng] [2024-12-01 01:06:23,511] [pool-1-thread-2] Initializing /data/public/jonas/JJ1473_control_24h/JJ1473_conrol_24h_02.nd2: [testng] [2024-12-01 01:06:24,393] [pool-1-thread-4] Initializing /data/bernhard/962_xy1.nd2: [testng] [2024-12-01 01:06:25,205] [pool-1-thread-6] Initializing /data/plaissue/2channel-Zstack-withBinaryLayer.nd2: [testng] [2024-12-01 01:06:26,070] [pool-1-thread-7] Initializing /data/public/jonas/2112-2265.nd2: [testng] [2024-12-01 01:06:28,139] [pool-1-thread-8] Initializing /data/michael/test_MCammer.nd2: [testng] [2024-12-01 01:06:29,233] [pool-1-thread-9] Initializing /data/venu/N202-11 20x20.nd2: [testng] [2024-12-01 01:06:30,253] [pool-1-thread-10] Initializing /data/david/NDSequence012.nd2: [testng] [2024-12-01 01:06:31,694] [pool-1-thread-3] Initializing /data/gh-3565/example_metadata001.nd2: [testng] [2024-12-01 01:06:34,485] [pool-1-thread-2] Initializing /data/venu/nd-two_channel-3.nd2: [testng] [2024-12-01 01:06:35,410] [pool-1-thread-6] Initializing /data/stefanie/nd026_xy0.nd2: [testng] [2024-12-01 01:06:36,368] [pool-1-thread-4] Initializing /data/john/M900117_CBP11555_C264M2_SOL_CD31_s1.nd2: [testng] [2024-12-01 01:06:37,713] [pool-1-thread-5] Initializing /data/venu/N202.1A+7 2h.nd2: [testng] [2024-12-01 01:06:38,494] [pool-1-thread-8] Initializing /data/stefanie/200307_necl2.nd2: [testng] [2024-12-01 01:06:56,524] [pool-1-thread-3] Initializing /data/qa-9183/aaron_multi_positions.nd2: [testng] [2024-12-01 01:06:57,851] [pool-1-thread-9] Initializing /data/kevin/test1.nd2: [testng] [2024-12-01 01:06:58,543] [pool-1-thread-10] Initializing /data/qa-9207/n1e 570-wisp2 670-cdh6 -2(good 1-11)_xy1.nd2: [testng] [2024-12-01 01:07:01,814] [pool-1-thread-2] Initializing /data/jose/08_SO4_Fasc100_at_surface_w_average.nd2: [testng] [2024-12-01 01:07:02,472] [pool-1-thread-6] Initializing /data/sarah/sarah_1011.nd2: [testng] [2024-12-01 01:07:03,373] [pool-1-thread-7] Initializing /data/plaissue/4channel_Zseries.nd2: [testng] [2024-12-01 01:07:04,028] [pool-1-thread-5] Initializing /data/kaustav/cell field2.nd2: [testng] [2024-12-01 01:07:05,377] [pool-1-thread-9] Initializing /data/stephen/Cody_Temp_Copy_crop.tif: [testng] [2024-12-01 01:07:07,685] [pool-1-thread-10] Initializing /data/pki/20120730 RGB 293-S1PR1-eGFP 8 compound 24hr v1.nd2: [testng] [2024-12-01 01:07:08,878] [pool-1-thread-4] Initializing /data/michael/stopped-acquisition/ND2 file does not open MCammer.nd2: [testng] [2024-12-01 01:07:10,597] [pool-1-thread-3] Initializing /data/public/aryeh/weekend002.nd2: [testng] [2024-12-01 01:07:12,725] [pool-1-thread-6] Initializing /data/public/jonas/multicolorTest.nd2: [testng] [2024-12-01 01:07:16,470] [pool-1-thread-2] Initializing /data/qa-4836/MGH media d10 large image_crop.nd2: [testng] [2024-12-01 01:07:17,243] [pool-1-thread-7] Initializing /data/kyle/B204.nd2: [testng] [2024-12-01 01:07:18,951] [pool-1-thread-9] Initializing /data/michael/opened skewed - C=1.tif: [testng] [2024-12-01 01:07:20,299] [pool-1-thread-5] Initializing /data/david/NDSequence011.nd2: [testng] [2024-12-01 01:07:20,984] [pool-1-thread-4] Initializing /data/venu/three_160807_control cells_4D.tif: [testng] [2024-12-01 01:07:29,100] [pool-1-thread-5] Initializing /data/john/M900117_CBP11555_C264M2_GAST_T1_s1.nd2: [testng] [2024-12-01 01:07:31,474] [pool-1-thread-4] Initializing /data/jcb/201101064/Fig 8B imp beta alone-MaxIP.nd2: [testng] [2024-12-01 01:07:32,970] [pool-1-thread-9] Initializing /data/yanmei/snapcells-vps1002.nd2: [testng] [2024-12-01 01:07:34,938] [pool-1-thread-7] Initializing /data/public/karl/sample_image.nd2: [testng] [2024-12-01 01:07:39,676] [pool-1-thread-9] Initializing /data/venu/1_140508,control.nd2: [testng] [2024-12-01 01:07:40,510] [pool-1-thread-4] Initializing /data/public/jonas/512c/cag_p5_simgc_2511_70ms22s_crop.nd2: [testng] [2024-12-01 01:07:42,497] [pool-1-thread-7] Initializing /data/qa-10370/example_JPIKE.nd2: [testng] [2024-12-01 01:07:48,340] [pool-1-thread-4] Initializing /data/stefanie/nd27.nd2: [testng] [2024-12-01 01:07:49,004] [pool-1-thread-9] Initializing /data/damir/Plate000_Well1_Seq0000.nd2: [testng] [2024-12-01 01:07:50,248] [pool-1-thread-3] Initializing /data/uli/2012_04_19_CHOegfr_03.nd2: [testng] [2024-12-01 01:07:51,914] [pool-1-thread-6] Initializing /data/venu/N202-15 20x001.nd2: [testng] [2024-12-01 01:07:53,165] [pool-1-thread-5] Initializing /data/qa-17695/sample.nd2: [testng] [2024-12-01 01:07:53,835] [pool-1-thread-7] Initializing /data/public/jonas/jonas_nd2Test/Exception9_e3.nd2: [testng] [2024-12-01 01:07:54,400] [pool-1-thread-10] Initializing /data/kevin/100nm_1.nd2: [testng] [2024-12-01 01:07:59,276] [pool-1-thread-3] Initializing /data/qa-9193/60x oil line scan 1 airy mono.nd2: [testng] [2024-12-01 01:07:59,895] [pool-1-thread-4] Initializing /data/dallas/150609_m597_ut8.nd2: [testng] [2024-12-01 01:08:00,776] [pool-1-thread-2] Initializing /data/venu/six_160807_control cells_4D.tif: [testng] [2024-12-01 01:08:01,971] [pool-1-thread-6] Initializing /data/venu/nd-three_channel-0.nd2: [testng] [2024-12-01 01:08:03,310] [pool-1-thread-7] Initializing /data/qa-7536/SampleND2-ChrisL.nd2: [testng] [2024-12-01 01:08:07,022] [pool-1-thread-5] Initializing /data/michael/tiling_problem_mcammer.nd2: [testng] [2024-12-01 01:08:08,521] [pool-1-thread-3] Initializing /data/bioformats2raw-184/Round1-Slot_01-Slide_01-Region_1-Stitched-Focused.nd2: [testng] [2024-12-01 01:12:19,133] [pool-1-thread-2] Initializing /data/venu/nd-three_channel-4.nd2: [testng] [2024-12-01 01:12:21,163] [pool-1-thread-6] Initializing /data/public/jonas/512c/wtf_DIC.nd2: [testng] [2024-12-01 01:12:22,033] [pool-1-thread-10] Initializing /data/bassem/A PSF1.nd2: [testng] [2024-12-01 01:12:24,677] [pool-1-thread-7] Initializing /data/public/jonas/100217_OD122_001.nd2: [testng] [2024-12-01 01:12:28,101] [pool-1-thread-10] Initializing /data/david/_t4h f.nd2: [testng] [2024-12-01 01:12:29,144] [pool-1-thread-5] Initializing /data/yarden/KH2_Well1_4x.nd2: [testng] [2024-12-01 01:12:31,797] [pool-1-thread-2] Initializing /data/imagesc-76438/FirstFileUsed_Slide2-20-1_ChannelBrightfield_Seq0001.nd2: [testng] [2024-12-01 01:12:33,254] [pool-1-thread-6] Initializing /data/aryeh/BY_GFP-Mup1_mCHERRY-VPH1_10-7-2012_Meytal-Waiss_XYZT_GOOD.nd2: [testng] [2024-12-01 01:12:36,356] [pool-1-thread-10] Initializing /data/plaissue/4channel_Zseries_2XYpoints_withROIandBinaryLayer.nd2: [testng] [2024-12-01 01:12:38,916] [pool-1-thread-7] Initializing /data/public/jonas/movieSize/JJ_RNAi_hmr-1_001.nd2: [testng] [2024-12-01 01:12:40,570] [pool-1-thread-2] Initializing /data/strand/Reconstructed ND acquisition1.nd2: [testng] [2024-12-01 01:12:43,283] [pool-1-thread-6] Initializing /data/qa-7303/CTR011.nd2: [testng] [2024-12-01 01:12:45,683] [pool-1-thread-10] Initializing /data/qa-5042/8xyPoints_3channels_00_30m235_all8xyIdentified.nd2: [testng] [2024-12-01 01:12:49,724] [pool-1-thread-7] Initializing /data/qa-7572/cells.nd2: [testng] [2024-12-01 01:12:52,868] [pool-1-thread-2] Initializing /data/qa-5042/8xyPoints_3channels_00_30m001_latelyOnly7xyIdentified.nd2: [testng] [2024-12-01 01:12:54,925] [pool-1-thread-6] Initializing /data/christophe/A1N1_Veh_2D_B4S.nd2: [testng] [2024-12-01 01:13:32,566] [pool-1-thread-5] Initializing /data/kevin/100&210nm_coat_1.nd2: [testng] [2024-12-01 01:13:34,678] [pool-1-thread-4] Initializing /data/public/aryeh/but3_cont200-1.nd2: [testng] [2024-12-01 01:13:36,004] [pool-1-thread-10] Initializing /data/public/jonas/jonas_nd2Test/Exception_2.nd2: [testng] [2024-12-01 01:13:39,468] [pool-1-thread-7] Initializing /data/qa-31330/Hotel_02-Slot_01-Slide_01-Region_1_Stitched.nd2: [testng] [2024-12-01 01:13:41,145] [pool-1-thread-10] Initializing /data/qa-4973/CX3+MCh Long Ova(4Henry)002.nd2: [testng] [2024-12-01 01:13:42,652] [pool-1-thread-2] Initializing /data/public/aryeh/MeOh_high_fluo_007.nd2: [testng] [2024-12-01 01:13:45,750] [pool-1-thread-7] Initializing /data/michael/3 stage positions 2 ch opens out of order with LOCI .nd2: [testng] [2024-12-01 01:13:47,417] [pool-1-thread-10] Initializing /data/bernhard/962.nd2: [testng] [2024-12-01 01:13:52,401] [pool-1-thread-2] Initializing /data/michael/opens_skewed.nd2: [testng] [2024-12-01 01:13:56,113] [pool-1-thread-7] Initializing /data/karsten/100720104_TestglasSchott_MM63_C10h.nd2: [testng] [2024-12-01 01:14:01,465] [pool-1-thread-5] Initializing /data/stefanie/nd026_xy2.nd2: [testng] [2024-12-01 01:14:07,366] [pool-1-thread-4] Initializing /data/plaissue/4channel_Zseries_withROIlayer.nd2: [testng] [2024-12-01 01:14:08,677] [pool-1-thread-5] Initializing /data/venu/nd-two_channel-4.nd2: [testng] [2024-12-01 01:14:09,655] [pool-1-thread-2] Initializing /data/public/aryeh/MeOh_high_fluo_011.nd2: [testng] [2024-12-01 01:14:12,859] [pool-1-thread-10] Initializing /data/imagesc-76438/Slide2-20-2_Region0003_ChannelBrightfield_Seq0013.nd2: [testng] [2024-12-01 01:14:22,089] [pool-1-thread-4] Initializing /data/qa-7535/JJ_Controls_D_004.nd2: [testng] [2024-12-01 01:14:25,198] [pool-1-thread-5] Initializing /data/qa-10100/20141002_V019+AFP1052n3-005.nd2: [testng] [2024-12-01 01:14:26,799] [pool-1-thread-2] Initializing /data/qa-4958/521_t1.nd2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 13091, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 54 minutes 55 seconds Finished: SUCCESS