Started by upstream project "BIOFORMATS-test-repo" build number 275
originally caused by:
Started by upstream project "Trigger" build number 296
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins2092159667210566451.sh
+ '[' picoquant = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_43357_merge_ci -v /uod/idr/repos/curated/picoquant:/data -v /uod/idr-scratch/merge-ci/curated/picoquant:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:21:17,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:21:17,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:21:17,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:21:17,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:21:17,842 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:21:17,842 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:21:17,842 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:21:17,843 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:21:17,843 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5d534f5d - End of configuration.
[testng] 01:21:17,843 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@51c668e3 - Registering current configuration as safe fallback point
[testng] 01:21:17,843 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2e6a8155 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 391 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-01 01:21:17,852] [main] java.version = 17.0.2
[testng] 01:21:17,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:21:17,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:17,894 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-01_01-21-17.log]
[testng] 01:21:17,895 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-12-01 01:21:17,897] [main] testng.directory = /data
[testng] [2024-12-01 01:21:17,897] [main] testng.configDirectory = /config
[testng] [2024-12-01 01:21:18,087] [main] testng.multiplier = 1.0
[testng] [2024-12-01 01:21:18,088] [main] testng.in-memory = false
[testng] [2024-12-01 01:21:18,088] [main] testng.allow-missing = false
[testng] [2024-12-01 01:21:18,089] [main] user.language = en
[testng] [2024-12-01 01:21:18,089] [main] user.country = ${user.country}
[testng] [2024-12-01 01:21:18,089] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-01 01:21:23,069] [main] ----------------------------------------
[testng] [2024-12-01 01:21:23,069] [main] Total files: 8
[testng] [2024-12-01 01:21:23,069] [main] Scan time: 4.98 s (622 ms/file)
[testng] [2024-12-01 01:21:23,069] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 8 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-01 01:21:28,098] [pool-1-thread-1] Initializing /data/qa-17134/VLDLR_mGFP_with_ligand.bin:
[testng] 01:21:28,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:21:28,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:28,102 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-01_01-21-28.log]
[testng] 01:21:28,103 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cb15202 - End of configuration.
[testng] [2024-12-01 01:21:28,965] [pool-1-thread-8] Initializing /data/qa-17095/IRF_256.bin:
[testng] 01:21:28,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:21:28,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:28,966 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-01_01-21-28.log]
[testng] 01:21:28,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36985746 - End of configuration.
[testng] [2024-12-01 01:21:29,920] [pool-1-thread-7] Initializing /data/qa-9505/GFP_and_mRFP_FRET.bin:
[testng] 01:21:29,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:21:29,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:29,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-01_01-21-29.log]
[testng] 01:21:29,922 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36f0fc35 - End of configuration.
[testng] [2024-12-01 01:21:30,802] [pool-1-thread-6] Initializing /data/neil/PollenGrains.bmp:
[testng] 01:21:30,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:21:30,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:30,803 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-01_01-21-30.log]
[testng] 01:21:30,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24ea6185 - End of configuration.
[testng] [2024-12-01 01:21:31,016] [pool-1-thread-5] Initializing /data/qa-9505/CENP-labelled_cells_for_FRET.bin:
[testng] 01:21:31,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:21:31,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:31,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-01_01-21-31.log]
[testng] 01:21:31,017 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16a3e0c0 - End of configuration.
[testng] [2024-12-01 01:21:32,331] [pool-1-thread-4] Initializing /data/neil/PollenGrainsSymPhoTime.png:
[testng] 01:21:32,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:21:32,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:32,332 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-01_01-21-32.log]
[testng] 01:21:32,333 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40cd0145 - End of configuration.
[testng] [2024-12-01 01:21:32,405] [pool-1-thread-3] Initializing /data/neil/PollenGrains.bin:
[testng] 01:21:32,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:21:32,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:32,406 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-01_01-21-32.log]
[testng] 01:21:32,407 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e81467b - End of configuration.
[testng] [2024-12-01 01:21:34,099] [pool-1-thread-2] Initializing /data/qa-9434/DaisyPollen.bin:
[testng] 01:21:34,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:21:34,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:34,100 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-01_01-21-34.log]
[testng] 01:21:34,100 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d729106 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 424, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 38 seconds
Finished: SUCCESS