Started by upstream project "BIOFORMATS-test-repo" build number 275
originally caused by:
 Started by upstream project "Trigger" build number 296
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins4316119972876455306.sh
+ '[' afi = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_43368_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:31:55,254 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:31:55,255 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 01:31:55,255 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:31:55,256 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:31:55,257 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:31:55,257 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:31:55,257 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:31:55,257 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:31:55,258 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:31:55,258 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:31:55,258 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:31:55,259 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:31:55,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:31:55,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:31:55,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:31:55,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:31:55,452 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:31:55,452 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:31:55,452 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:31:55,453 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:31:55,453 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 01:31:55,454 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 01:31:55,454 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-12-01 01:31:55,465] [main] java.version = 17.0.2
   [testng] 01:31:55,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:31:55,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:31:55,511 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-01_01-31-55.log]
   [testng] 01:31:55,513 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-12-01 01:31:55,515] [main] testng.directory = /data
   [testng] [2024-12-01 01:31:55,515] [main] testng.configDirectory = /config
   [testng] [2024-12-01 01:31:55,523] [main] testng.multiplier = 1.0
   [testng] [2024-12-01 01:31:55,524] [main] testng.in-memory = false
   [testng] [2024-12-01 01:31:55,524] [main] testng.allow-missing = false
   [testng] [2024-12-01 01:31:55,524] [main] user.language = en
   [testng] [2024-12-01 01:31:55,524] [main] user.country = ${user.country}
   [testng] [2024-12-01 01:31:55,524] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-12-01 01:31:58,524] [main] ----------------------------------------
   [testng] [2024-12-01 01:31:58,524] [main] Total files: 16
   [testng] [2024-12-01 01:31:58,524] [main] Scan time: 3.0 s (187 ms/file)
   [testng] [2024-12-01 01:31:58,524] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-12-01 01:32:16,403] [pool-1-thread-1] Initializing /data/samples/5440.afi: 
   [testng] 01:32:16,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:32:16,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:16,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-01_01-32-16.log]
   [testng] 01:32:16,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bd7b330 - End of configuration.
   [testng] [2024-12-01 01:32:16,918] [pool-1-thread-12] Initializing /data/samples/5339.afi: 
   [testng] 01:32:16,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:32:16,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:16,926 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-01_01-32-16.log]
   [testng] 01:32:16,927 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c6efe13 - End of configuration.
   [testng] [2024-12-01 01:32:17,543] [pool-1-thread-11] Initializing /data/samples/5383.afi: 
   [testng] 01:32:17,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:32:17,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:17,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-01_01-32-17.log]
   [testng] 01:32:17,544 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5601fe2a - End of configuration.
   [testng] [2024-12-01 01:32:17,951] [pool-1-thread-10] Initializing /data/samples/5306.afi: 
   [testng] 01:32:17,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:32:17,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:17,952 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-01_01-32-17.log]
   [testng] 01:32:17,953 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cf0c277 - End of configuration.
   [testng] [2024-12-01 01:32:18,468] [pool-1-thread-9] Initializing /data/samples/5351.afi: 
   [testng] 01:32:18,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:32:18,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:18,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-01_01-32-18.log]
   [testng] 01:32:18,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42092bac - End of configuration.
   [testng] [2024-12-01 01:32:19,218] [pool-1-thread-8] Initializing /data/samples/5400.afi: 
   [testng] 01:32:19,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:32:19,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:19,220 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-01_01-32-19.log]
   [testng] 01:32:19,220 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74b2f251 - End of configuration.
   [testng] [2024-12-01 01:32:19,939] [pool-1-thread-7] Initializing /data/samples/5387.afi: 
   [testng] 01:32:19,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:32:19,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:19,940 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-01_01-32-19.log]
   [testng] 01:32:19,941 |-INFO in ch.qos.logback.core.sift.SiftProcessor@455fa969 - End of configuration.
   [testng] [2024-12-01 01:32:20,552] [pool-1-thread-6] Initializing /data/samples/5365.afi: 
   [testng] 01:32:20,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:32:20,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:20,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-01_01-32-20.log]
   [testng] 01:32:20,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25f195f1 - End of configuration.
   [testng] [2024-12-01 01:32:21,006] [pool-1-thread-5] Initializing /data/samples/5407.afi: 
   [testng] 01:32:21,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:32:21,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:21,008 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-01_01-32-21.log]
   [testng] 01:32:21,008 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60aae8bf - End of configuration.
   [testng] [2024-12-01 01:32:21,430] [pool-1-thread-4] Initializing /data/samples/5343.afi: 
   [testng] 01:32:21,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:32:21,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:21,431 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-01_01-32-21.log]
   [testng] 01:32:21,432 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c6245ae - End of configuration.
   [testng] [2024-12-01 01:32:21,881] [pool-1-thread-3] Initializing /data/samples/5371.afi: 
   [testng] 01:32:21,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:32:21,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:21,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-01_01-32-21.log]
   [testng] 01:32:21,883 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6963f6d7 - End of configuration.
   [testng] [2024-12-01 01:32:22,353] [pool-1-thread-2] Initializing /data/samples/5347.afi: 
   [testng] 01:32:22,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:32:22,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:22,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-01_01-32-22.log]
   [testng] 01:32:22,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6473f3cd - End of configuration.
   [testng] [2024-12-01 01:33:08,994] [pool-1-thread-10] Initializing /data/samples/5358.afi: 
   [testng] [2024-12-01 01:33:16,470] [pool-1-thread-6] Initializing /data/samples/5446.afi: 
   [testng] [2024-12-01 01:33:17,884] [pool-1-thread-7] Initializing /data/samples/5414.afi: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 2 minutes 13 seconds
Finished: SUCCESS