Started by upstream project "BIOFORMATS-test-repo" build number 275
originally caused by:
Started by upstream project "Trigger" build number 296
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins9338589408172155160.sh
+ '[' biorad-gel = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_43421_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 03:06:05,150 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 03:06:05,151 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 03:06:05,151 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:06:05,152 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:06:05,153 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 03:06:05,153 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 03:06:05,153 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 03:06:05,153 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:06:05,154 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:06:05,154 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 03:06:05,155 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 03:06:05,155 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 03:06:05,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 03:06:05,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 03:06:05,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 03:06:05,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 03:06:05,402 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 03:06:05,403 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 03:06:05,403 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 03:06:05,403 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 03:06:05,403 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 03:06:05,404 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 03:06:05,404 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 250 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-01 03:06:05,413] [main] java.version = 17.0.2
[testng] 03:06:05,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:06:05,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:06:05,461 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-01_03-06-05.log]
[testng] 03:06:05,462 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-12-01 03:06:05,464] [main] testng.directory = /data
[testng] [2024-12-01 03:06:05,465] [main] testng.configDirectory = /config
[testng] [2024-12-01 03:06:05,473] [main] testng.multiplier = 1.0
[testng] [2024-12-01 03:06:05,474] [main] testng.in-memory = false
[testng] [2024-12-01 03:06:05,474] [main] testng.allow-missing = false
[testng] [2024-12-01 03:06:05,474] [main] user.language = en
[testng] [2024-12-01 03:06:05,475] [main] user.country = ${user.country}
[testng] [2024-12-01 03:06:05,475] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-01 03:06:08,617] [main] ----------------------------------------
[testng] [2024-12-01 03:06:08,617] [main] Total files: 32
[testng] [2024-12-01 03:06:08,617] [main] Scan time: 3.142 s (98 ms/file)
[testng] [2024-12-01 03:06:08,617] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 32 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-01 03:06:22,211] [pool-1-thread-1] Initializing /data/samples/Criterion.1sc:
[testng] 03:06:22,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 03:06:22,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:06:22,213 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-01_03-06-22.log]
[testng] 03:06:22,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3be5632a - End of configuration.
[testng] [2024-12-01 03:06:22,460] [pool-1-thread-12] Initializing /data/qa-29459/bad.jpg:
[testng] 03:06:22,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 03:06:22,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:06:22,461 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-01_03-06-22.log]
[testng] 03:06:22,461 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64338a9a - End of configuration.
[testng] [2024-12-01 03:06:22,551] [pool-1-thread-11] Initializing /data/david/Opened in imageJ.tiff:
[testng] 03:06:22,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 03:06:22,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:06:22,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-01_03-06-22.log]
[testng] 03:06:22,552 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ef3966b - End of configuration.
[testng] [2024-12-01 03:06:23,404] [pool-1-thread-10] Initializing /data/sylvain/2009-10-26 14hr 59min.tif:
[testng] 03:06:23,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 03:06:23,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:06:23,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-01_03-06-23.log]
[testng] 03:06:23,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@717c6174 - End of configuration.
[testng] [2024-12-01 03:06:24,360] [pool-1-thread-9] Initializing /data/sylvain/2009-10-26 14hr 56min.tif:
[testng] 03:06:24,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 03:06:24,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:06:24,361 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-01_03-06-24.log]
[testng] 03:06:24,362 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e5a5331 - End of configuration.
[testng] [2024-12-01 03:06:25,237] [pool-1-thread-8] Initializing /data/sylvain/2009-10-23 12hr 19min:
[testng] 03:06:25,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 03:06:25,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:06:25,238 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-01_03-06-25.log]
[testng] 03:06:25,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79b795ae - End of configuration.
[testng] [2024-12-01 03:06:25,548] [pool-1-thread-7] Initializing /data/samples/imagesEight.1sc:
[testng] 03:06:25,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 03:06:25,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:06:25,549 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-01_03-06-25.log]
[testng] 03:06:25,550 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dc48a5 - End of configuration.
[testng] [2024-12-01 03:06:25,801] [pool-1-thread-6] Initializing /data/sylvain/2009-10-26 14hr 57min.tif:
[testng] 03:06:25,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 03:06:25,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:06:25,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-01_03-06-25.log]
[testng] 03:06:25,802 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c3c493a - End of configuration.
[testng] [2024-12-01 03:06:26,740] [pool-1-thread-5] Initializing /data/keith/test2.1sc:
[testng] 03:06:26,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 03:06:26,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:06:26,740 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-01_03-06-26.log]
[testng] 03:06:26,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1af6b47a - End of configuration.
[testng] [2024-12-01 03:06:27,000] [pool-1-thread-4] Initializing /data/david/Original Biorad Gel format file.1sc:
[testng] 03:06:27,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 03:06:27,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:06:27,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-01_03-06-27.log]
[testng] 03:06:27,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cccfb05 - End of configuration.
[testng] [2024-12-01 03:06:27,229] [pool-1-thread-3] Initializing /data/david/Converted in Quantity One (Biorad).tiff:
[testng] 03:06:27,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 03:06:27,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:06:27,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-01_03-06-27.log]
[testng] 03:06:27,230 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29aeaf55 - End of configuration.
[testng] [2024-12-01 03:06:28,074] [pool-1-thread-2] Initializing /data/geert/bad example1.1sc:
[testng] 03:06:28,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 03:06:28,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:06:28,075 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-01_03-06-28.log]
[testng] 03:06:28,075 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ca02fd7 - End of configuration.
[testng] [2024-12-01 03:06:31,861] [pool-1-thread-12] Initializing /data/qa-29469/good.1sc:
[testng] [2024-12-01 03:06:32,525] [pool-1-thread-7] Initializing /data/qa-29469/bad3.1sc:
[testng] [2024-12-01 03:06:32,826] [pool-1-thread-5] Initializing /data/adrian/test_img.1sc:
[testng] [2024-12-01 03:06:33,095] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 59min:
[testng] [2024-12-01 03:06:33,349] [pool-1-thread-1] Initializing /data/qa-29459/bad.1sc:
[testng] [2024-12-01 03:06:33,606] [pool-1-thread-8] Initializing /data/geert/bad example1.1sc.jpg:
[testng] [2024-12-01 03:06:33,721] [pool-1-thread-2] Initializing /data/keith/pg020410saur3.1sc:
[testng] [2024-12-01 03:06:36,682] [pool-1-thread-2] Initializing /data/keith/PF020426MRSA v2.1sc:
[testng] [2024-12-01 03:06:37,158] [pool-1-thread-11] Initializing /data/sylvain/2009-10-26 14hr 56min:
[testng] [2024-12-01 03:06:37,527] [pool-1-thread-3] Initializing /data/keith/PF020328saur v3.1sc:
[testng] [2024-12-01 03:06:37,784] [pool-1-thread-12] Initializing /data/qa-16880/c-src v7.1sc:
[testng] [2024-12-01 03:06:38,016] [pool-1-thread-1] Initializing /data/geert/good example1.1sc.jpg:
[testng] [2024-12-01 03:06:38,114] [pool-1-thread-10] Initializing /data/sylvain/2009-10-26 14hr 57min:
[testng] [2024-12-01 03:06:38,387] [pool-1-thread-6] Initializing /data/sylvain/2009-10-23 12hr 18min:
[testng] [2024-12-01 03:06:38,651] [pool-1-thread-7] Initializing /data/keith/test.1sc:
[testng] [2024-12-01 03:06:38,886] [pool-1-thread-4] Initializing /data/geert/good example1.1sc:
[testng] [2024-12-01 03:06:39,118] [pool-1-thread-9] Initializing /data/geert/bad example1.jpg:
[testng] [2024-12-01 03:06:39,223] [pool-1-thread-5] Initializing /data/qa-29469/bad2.1sc:
[testng] [2024-12-01 03:06:39,474] [pool-1-thread-8] Initializing /data/sylvain/2009-10-23 12hr 19min.tif:
[testng] [2024-12-01 03:06:42,089] [pool-1-thread-2] Initializing /data/sylvain/2009-10-23 12hr 18min.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1696, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 47 seconds
Finished: SUCCESS