![[Jenkins]](/jenkins/static/28c89a1b/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 276 originally caused by: Started by upstream project "Trigger" build number 297 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins6928959633358770422.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_43462_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:23:19,260 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:23:19,262 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:23:19,262 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:23:19,263 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:23:19,263 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:23:19,263 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:23:19,264 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:23:19,264 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:23:19,264 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:23:19,265 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:23:19,265 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:23:19,265 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:23:19,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:23:19,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:23:19,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:23:19,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:23:19,547 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:23:19,547 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:23:19,547 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:23:19,548 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:23:19,548 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:23:19,549 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:23:19,549 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 285 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-02 00:23:19,559] [main] java.version = 1.8.0_342 [testng] 00:23:19,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:23:19,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:19,612 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-02_00-23-19.log] [testng] 00:23:19,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-02 00:23:19,616] [main] testng.directory = /data [testng] [2024-12-02 00:23:19,617] [main] testng.configDirectory = /config [testng] [2024-12-02 00:23:19,634] [main] testng.multiplier = 1.0 [testng] [2024-12-02 00:23:19,635] [main] testng.in-memory = false [testng] [2024-12-02 00:23:19,635] [main] testng.allow-missing = false [testng] [2024-12-02 00:23:19,635] [main] user.language = fr [testng] [2024-12-02 00:23:19,635] [main] user.country = FR [testng] [2024-12-02 00:23:19,635] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-02 00:23:47,663] [main] ---------------------------------------- [testng] [2024-12-02 00:23:47,663] [main] Total files: 315 [testng] [2024-12-02 00:23:47,663] [main] Scan time: 28.028 s (88 ms/file) [testng] [2024-12-02 00:23:47,663] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 192 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-02 00:34:30,166] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] 00:34:30,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:34:30,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:30,167 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-02_00-34-30.log] [testng] 00:34:30,168 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d25fc33 - End of configuration. [testng] [2024-12-02 00:34:32,034] [pool-1-thread-12] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] 00:34:32,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:34:32,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:32,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-02_00-34-32.log] [testng] 00:34:32,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11fa0e9d - End of configuration. [testng] [2024-12-02 00:34:32,618] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] 00:34:32,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:34:32,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:32,619 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-02_00-34-32.log] [testng] 00:34:32,619 |-INFO in ch.qos.logback.core.sift.SiftProcessor@587511e9 - End of configuration. [testng] [2024-12-02 00:34:33,092] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] 00:34:33,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:34:33,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:33,094 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-02_00-34-33.log] [testng] 00:34:33,094 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a0dd669 - End of configuration. [testng] [2024-12-02 00:34:33,472] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] 00:34:33,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:34:33,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:33,473 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-02_00-34-33.log] [testng] 00:34:33,473 |-INFO in ch.qos.logback.core.sift.SiftProcessor@497d8bff - End of configuration. [testng] [2024-12-02 00:34:33,885] [pool-1-thread-8] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] 00:34:33,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:34:33,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:33,885 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-02_00-34-33.log] [testng] 00:34:33,886 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6edf5f28 - End of configuration. [testng] [2024-12-02 00:34:35,217] [pool-1-thread-7] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] 00:34:35,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:34:35,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:35,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-02_00-34-35.log] [testng] 00:34:35,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@515f8491 - End of configuration. [testng] [2024-12-02 00:34:35,245] [pool-1-thread-6] Initializing /data/qa-17270/alexa488.ome.tif: [testng] 00:34:35,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:34:35,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:35,246 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-02_00-34-35.log] [testng] 00:34:35,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@686fe44a - End of configuration. [testng] [2024-12-02 00:34:35,647] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] 00:34:35,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:34:35,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:35,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-02_00-34-35.log] [testng] 00:34:35,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28fe97a9 - End of configuration. [testng] [2024-12-02 00:34:36,130] [pool-1-thread-4] Initializing /data/qa-16871/XY_0003.oir: [testng] 00:34:36,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:34:36,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:36,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-02_00-34-36.log] [testng] 00:34:36,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e36b524 - End of configuration. [testng] [2024-12-02 00:34:36,522] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] 00:34:36,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:34:36,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:36,524 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-02_00-34-36.log] [testng] 00:34:36,524 |-INFO in ch.qos.logback.core.sift.SiftProcessor@286bd72a - End of configuration. [testng] [2024-12-02 00:34:37,446] [pool-1-thread-2] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] 00:34:37,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:34:37,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:37,447 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-02_00-34-37.log] [testng] 00:34:37,447 |-INFO in ch.qos.logback.core.sift.SiftProcessor@397e62ed - End of configuration. [testng] [2024-12-02 00:34:39,487] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-12-02 00:34:42,212] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-12-02 00:34:43,154] [pool-1-thread-9] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-12-02 00:35:44,546] [pool-1-thread-6] Initializing /data/qa-17919/f10187.oir: [testng] [2024-12-02 00:36:06,287] [pool-1-thread-8] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-12-02 00:36:06,866] [pool-1-thread-3] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-12-02 00:36:11,707] [pool-1-thread-12] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-12-02 00:36:12,228] [pool-1-thread-2] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-12-02 00:36:13,947] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] [2024-12-02 00:36:15,174] [pool-1-thread-10] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-12-02 00:36:16,514] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-12-02 00:36:22,223] [pool-1-thread-11] Initializing /data/qa-17270/image1.oir: [testng] [2024-12-02 00:36:24,851] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-12-02 00:36:26,392] [pool-1-thread-4] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-12-02 00:36:27,327] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-12-02 00:36:29,011] [pool-1-thread-2] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-12-02 00:36:29,959] [pool-1-thread-10] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-12-02 00:36:30,901] [pool-1-thread-7] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-12-02 00:36:39,379] [pool-1-thread-8] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-12-02 00:36:40,799] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-12-02 00:36:44,033] [pool-1-thread-12] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-12-02 00:36:44,974] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-12-02 00:36:50,441] [pool-1-thread-8] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-12-02 00:36:51,672] [pool-1-thread-5] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-12-02 00:36:52,833] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-12-02 00:36:53,271] [pool-1-thread-2] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-12-02 00:36:55,541] [pool-1-thread-7] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-12-02 00:36:57,817] [pool-1-thread-12] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-12-02 00:37:00,964] [pool-1-thread-5] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-12-02 00:37:01,800] [pool-1-thread-8] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-12-02 00:37:03,676] [pool-1-thread-7] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-12-02 00:37:06,074] [pool-1-thread-2] Initializing /data/qa-17335/1.oir: [testng] [2024-12-02 00:37:07,924] [pool-1-thread-4] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-12-02 00:37:09,756] [pool-1-thread-8] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-12-02 00:37:11,476] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-12-02 00:37:13,069] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-12-02 00:37:14,874] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-12-02 00:37:19,723] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-12-02 00:37:26,705] [pool-1-thread-7] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-12-02 00:37:39,859] [pool-1-thread-12] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-12-02 00:37:43,359] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-12-02 00:37:46,167] [pool-1-thread-10] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-12-02 00:37:52,268] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-12-02 00:37:54,795] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-12-02 00:37:57,603] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-12-02 00:38:03,435] [pool-1-thread-2] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-12-02 00:38:04,239] [pool-1-thread-5] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-12-02 00:38:06,410] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-12-02 00:38:09,319] [pool-1-thread-10] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-12-02 00:38:26,351] [pool-1-thread-8] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-12-02 00:38:27,454] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-12-02 00:38:28,386] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-12-02 00:38:29,654] [pool-1-thread-2] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-12-02 00:38:33,139] [pool-1-thread-12] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-12-02 00:38:34,537] [pool-1-thread-11] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-12-02 00:38:42,004] [pool-1-thread-8] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-12-02 00:38:44,361] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-12-02 00:38:45,006] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-12-02 00:38:50,380] [pool-1-thread-4] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-12-02 00:38:52,630] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-12-02 00:38:55,960] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-12-02 00:38:56,288] [pool-1-thread-12] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-12-02 00:39:00,093] [pool-1-thread-12] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-12-02 00:39:02,039] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-12-02 00:39:03,051] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-12-02 00:39:06,311] [pool-1-thread-4] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-12-02 00:39:07,677] [pool-1-thread-5] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-12-02 00:39:09,212] [pool-1-thread-11] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-12-02 00:39:10,260] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-12-02 00:39:13,686] [pool-1-thread-5] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-12-02 00:39:14,241] [pool-1-thread-4] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-12-02 00:39:16,006] [pool-1-thread-8] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-12-02 00:39:19,926] [pool-1-thread-11] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-12-02 00:39:24,692] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-12-02 00:39:25,510] [pool-1-thread-4] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-12-02 00:39:29,955] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-12-02 00:39:31,553] [pool-1-thread-2] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-12-02 00:39:34,806] [pool-1-thread-2] Initializing /data/olympus/XYZt.oir: [testng] [2024-12-02 00:39:43,281] [pool-1-thread-8] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-12-02 00:39:43,911] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-12-02 00:39:44,789] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-12-02 00:39:47,618] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-12-02 00:39:49,161] [pool-1-thread-1] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir: [testng] [2024-12-02 00:39:50,591] [pool-1-thread-4] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-12-02 00:39:52,092] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-12-02 00:39:53,182] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-12-02 00:39:55,349] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-12-02 00:39:56,284] [pool-1-thread-8] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-12-02 00:39:58,849] [pool-1-thread-11] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-12-02 00:40:00,878] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-12-02 00:40:03,714] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-12-02 00:40:05,027] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-12-02 00:40:07,986] [pool-1-thread-4] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-12-02 00:40:11,380] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-12-02 00:40:14,462] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-12-02 00:40:15,173] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-12-02 00:40:16,947] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-12-02 00:40:19,677] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-12-02 00:40:20,507] [pool-1-thread-8] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-12-02 00:40:20,919] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-12-02 00:40:21,681] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-12-02 00:40:22,280] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-12-02 00:40:24,306] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-12-02 00:40:25,392] [pool-1-thread-8] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-12-02 00:40:27,905] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-12-02 00:40:28,512] [pool-1-thread-5] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-12-02 00:40:28,962] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-12-02 00:40:29,253] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-12-02 00:40:32,313] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-12-02 00:40:33,407] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-12-02 00:40:34,286] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-12-02 00:40:35,844] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-12-02 00:40:37,158] [pool-1-thread-12] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-12-02 00:40:39,474] [pool-1-thread-1] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-12-02 00:40:40,072] [pool-1-thread-11] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-12-02 00:40:41,156] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-12-02 00:40:42,000] [pool-1-thread-8] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-12-02 00:40:42,725] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-12-02 00:40:44,331] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-12-02 00:40:45,188] [pool-1-thread-12] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-12-02 00:40:48,673] [pool-1-thread-11] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-12-02 00:40:56,651] [pool-1-thread-1] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-12-02 00:40:57,708] [pool-1-thread-8] Initializing /data/olympus/XYZt.vsi: [testng] [2024-12-02 00:40:59,004] [pool-1-thread-7] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-12-02 00:40:59,944] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-12-02 00:41:01,294] [pool-1-thread-4] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-12-02 00:41:02,902] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-12-02 00:41:04,339] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-12-02 00:41:05,895] [pool-1-thread-1] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir: [testng] [2024-12-02 00:41:06,750] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-12-02 00:41:07,942] [pool-1-thread-5] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-12-02 00:41:10,342] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-12-02 00:41:11,820] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-12-02 00:41:14,606] [pool-1-thread-12] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-12-02 00:41:17,542] [pool-1-thread-8] Initializing /data/qa-17270/stack1.oir: [testng] [2024-12-02 00:41:28,486] [pool-1-thread-2] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-12-02 00:41:39,919] [pool-1-thread-4] Initializing /data/qa-17917/f10010.oir: [testng] [2024-12-02 00:43:01,341] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-12-02 00:43:03,539] [pool-1-thread-7] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-12-02 00:43:05,179] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-12-02 00:43:06,493] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-12-02 00:43:09,794] [pool-1-thread-7] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-12-02 00:43:11,197] [pool-1-thread-1] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-12-02 00:43:15,182] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-12-02 00:43:17,516] [pool-1-thread-7] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-12-02 00:43:18,951] [pool-1-thread-12] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-12-02 00:43:24,069] [pool-1-thread-12] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-12-02 00:43:31,602] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-12-02 00:43:33,831] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-12-02 00:43:37,883] [pool-1-thread-3] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-12-02 00:43:38,694] [pool-1-thread-5] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-12-02 00:43:43,337] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-12-02 00:43:43,989] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-12-02 00:43:53,288] [pool-1-thread-10] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] [2024-12-02 00:43:55,084] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-12-02 00:43:57,811] [pool-1-thread-7] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-12-02 00:44:02,159] [pool-1-thread-10] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-12-02 00:44:10,059] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-12-02 00:44:10,394] [pool-1-thread-1] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-12-02 00:44:15,053] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-12-02 00:44:15,480] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-12-02 00:44:19,031] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-12-02 00:44:19,296] [pool-1-thread-12] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-12-02 00:44:24,000] [pool-1-thread-1] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-12-02 00:44:26,786] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-12-02 00:44:27,543] [pool-1-thread-1] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-12-02 00:44:31,267] [pool-1-thread-3] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-12-02 00:44:31,673] [pool-1-thread-1] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-12-02 00:44:35,712] [pool-1-thread-3] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-12-02 00:44:36,309] [pool-1-thread-1] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info: [testng] [2024-12-02 00:45:22,278] [pool-1-thread-3] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-12-02 00:47:01,035] [pool-1-thread-5] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-12-02 00:47:01,493] [pool-1-thread-8] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-12-02 00:47:03,885] [pool-1-thread-6] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-12-02 00:47:07,501] [pool-1-thread-5] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-12-02 00:47:10,084] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-12-02 00:47:10,630] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-12-02 00:47:10,936] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-12-02 00:47:13,791] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-12-02 00:47:14,734] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 10176, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 68 minutes 42 seconds Finished: SUCCESS