Started by upstream project "BIOFORMATS-test-repo" build number 276 originally caused by: Started by upstream project "Trigger" build number 297 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins12906089723095591230.sh + '[' lim = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_43466_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:24:46,541 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:24:46,542 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:24:46,542 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:24:46,544 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:24:46,544 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:24:46,544 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:24:46,544 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:24:46,544 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:24:46,545 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:24:46,545 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:24:46,545 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:24:46,545 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:24:46,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:24:46,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:24:46,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:24:46,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:24:46,816 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:24:46,816 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:24:46,816 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:24:46,817 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:24:46,817 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:24:46,818 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:24:46,818 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 273 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-02 00:24:46,828] [main] java.version = 1.8.0_342 [testng] 00:24:46,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:24:46,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:46,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-02_00-24-46.log] [testng] 00:24:46,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-02 00:24:46,882] [main] testng.directory = /data [testng] [2024-12-02 00:24:46,882] [main] testng.configDirectory = /config [testng] [2024-12-02 00:24:46,895] [main] testng.multiplier = 1.0 [testng] [2024-12-02 00:24:46,895] [main] testng.in-memory = false [testng] [2024-12-02 00:24:46,895] [main] testng.allow-missing = false [testng] [2024-12-02 00:24:46,895] [main] user.language = fr [testng] [2024-12-02 00:24:46,895] [main] user.country = FR [testng] [2024-12-02 00:24:46,895] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-02 00:24:47,776] [main] ---------------------------------------- [testng] [2024-12-02 00:24:47,776] [main] Total files: 21 [testng] [2024-12-02 00:24:47,776] [main] Scan time: 0.881 s (41 ms/file) [testng] [2024-12-02 00:24:47,776] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-02 00:24:53,020] [pool-1-thread-1] Initializing /data/venu/Kontrolle0003.lim: [testng] 00:24:53,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:24:53,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:53,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-02_00-24-53.log] [testng] 00:24:53,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cdbbad7 - End of configuration. [testng] [2024-12-02 00:24:53,275] [pool-1-thread-12] Initializing /data/venu/Kontrolle0016.lim: [testng] 00:24:53,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:24:53,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:53,276 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-02_00-24-53.log] [testng] 00:24:53,277 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a173535 - End of configuration. [testng] [2024-12-02 00:24:53,505] [pool-1-thread-11] Initializing /data/venu/Kontrolle0019.lim: [testng] 00:24:53,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:24:53,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:53,506 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-02_00-24-53.log] [testng] 00:24:53,507 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6188c4d3 - End of configuration. [testng] [2024-12-02 00:24:53,728] [pool-1-thread-10] Initializing /data/venu/Kontrolle0010.lim: [testng] 00:24:53,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:24:53,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:53,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-02_00-24-53.log] [testng] 00:24:53,729 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3168b5ad - End of configuration. [testng] [2024-12-02 00:24:53,933] [pool-1-thread-9] Initializing /data/venu/Kontrolle0007.lim: [testng] 00:24:53,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:24:53,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:53,934 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-02_00-24-53.log] [testng] 00:24:53,935 |-INFO in ch.qos.logback.core.sift.SiftProcessor@292d6ffa - End of configuration. [testng] [2024-12-02 00:24:54,138] [pool-1-thread-8] Initializing /data/venu/Kontrolle0018.lim: [testng] 00:24:54,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:24:54,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:54,138 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-02_00-24-54.log] [testng] 00:24:54,139 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c633810 - End of configuration. [testng] [2024-12-02 00:24:54,349] [pool-1-thread-7] Initializing /data/venu/Kontrolle0009.lim: [testng] 00:24:54,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:24:54,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:54,350 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-02_00-24-54.log] [testng] 00:24:54,350 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46320e52 - End of configuration. [testng] [2024-12-02 00:24:54,562] [pool-1-thread-6] Initializing /data/venu/Kontrolle0008.lim: [testng] 00:24:54,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:24:54,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:54,563 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-02_00-24-54.log] [testng] 00:24:54,563 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dec7904 - End of configuration. [testng] [2024-12-02 00:24:54,777] [pool-1-thread-5] Initializing /data/venu/Kontrolle0005.lim: [testng] 00:24:54,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:24:54,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:54,777 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-02_00-24-54.log] [testng] 00:24:54,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b5da5e7 - End of configuration. [testng] [2024-12-02 00:24:54,996] [pool-1-thread-4] Initializing /data/venu/Kontrolle0004.lim: [testng] 00:24:54,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:24:54,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:54,997 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-02_00-24-54.log] [testng] 00:24:54,997 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f2c7139 - End of configuration. [testng] [2024-12-02 00:24:55,218] [pool-1-thread-3] Initializing /data/venu/Kontrolle0014.lim: [testng] 00:24:55,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:24:55,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:55,219 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-02_00-24-55.log] [testng] 00:24:55,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@211e6417 - End of configuration. [testng] [2024-12-02 00:24:55,427] [pool-1-thread-2] Initializing /data/venu/Kontrolle0001.lim: [testng] 00:24:55,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:24:55,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:55,429 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-02_00-24-55.log] [testng] 00:24:55,429 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46dd3e2e - End of configuration. [testng] [2024-12-02 00:24:59,982] [pool-1-thread-4] Initializing /data/venu/Kontrolle0020.lim: [testng] [2024-12-02 00:25:00,185] [pool-1-thread-1] Initializing /data/venu/Kontrolle0015.lim: [testng] [2024-12-02 00:25:00,411] [pool-1-thread-2] Initializing /data/venu/Kontrolle0013.lim: [testng] [2024-12-02 00:25:00,622] [pool-1-thread-3] Initializing /data/venu/Kontrolle0021.lim: [testng] [2024-12-02 00:25:00,847] [pool-1-thread-9] Initializing /data/venu/Kontrolle0017.lim: [testng] [2024-12-02 00:25:01,070] [pool-1-thread-12] Initializing /data/venu/Kontrolle0002.lim: [testng] [2024-12-02 00:25:01,283] [pool-1-thread-7] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-12-02 00:25:01,500] [pool-1-thread-10] Initializing /data/venu/Kontrolle0012.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 seconds Finished: SUCCESS