Started by upstream project "BIOFORMATS-test-repo" build number 276
originally caused by:
Started by upstream project "Trigger" build number 297
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins13726849425717967743.sh
+ '[' zip = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_43473_merge_ci -v /uod/idr/repos/curated/zip:/data -v /uod/idr-scratch/merge-ci/curated/zip:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:28:39,853 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:28:39,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 00:28:39,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:28:39,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:28:39,856 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:28:39,856 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:28:39,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:28:39,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:28:39,857 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:28:39,857 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:28:39,857 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:28:39,857 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:28:40,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:28:40,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:28:40,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:28:40,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:28:40,152 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:28:40,152 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:28:40,152 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:28:40,153 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:28:40,153 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 00:28:40,154 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 00:28:40,154 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 297 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-02 00:28:40,165] [main] java.version = 1.8.0_342
[testng] 00:28:40,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:28:40,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:40,216 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-02_00-28-40.log]
[testng] 00:28:40,218 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-02 00:28:40,220] [main] testng.directory = /data
[testng] [2024-12-02 00:28:40,220] [main] testng.configDirectory = /config
[testng] [2024-12-02 00:28:40,233] [main] testng.multiplier = 1.0
[testng] [2024-12-02 00:28:40,234] [main] testng.in-memory = false
[testng] [2024-12-02 00:28:40,234] [main] testng.allow-missing = false
[testng] [2024-12-02 00:28:40,234] [main] user.language = fr
[testng] [2024-12-02 00:28:40,234] [main] user.country = FR
[testng] [2024-12-02 00:28:40,234] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-02 00:28:41,046] [main] ----------------------------------------
[testng] [2024-12-02 00:28:41,046] [main] Total files: 22
[testng] [2024-12-02 00:28:41,046] [main] Scan time: 0.812 s (36 ms/file)
[testng] [2024-12-02 00:28:41,047] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 22 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-02 00:30:35,177] [pool-1-thread-1] Initializing /data/samples/sdub.zip:
[testng] 00:30:35,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:30:35,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:35,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-02_00-30-35.log]
[testng] 00:30:35,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fe17ff7 - End of configuration.
[testng] [2024-12-02 00:30:36,122] [pool-1-thread-12] Initializing /data/imagej/mri-stack.zip:
[testng] 00:30:36,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:30:36,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:36,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-02_00-30-36.log]
[testng] 00:30:36,124 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69ed8d30 - End of configuration.
[testng] [2024-12-02 00:30:38,721] [pool-1-thread-11] Initializing /data/imagej/hela-cells.zip:
[testng] 00:30:38,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:30:38,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:38,723 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-02_00-30-38.log]
[testng] 00:30:38,723 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9eb1777 - End of configuration.
[testng] [2024-12-02 00:30:42,765] [pool-1-thread-10] Initializing /data/imagej/watershed-animation.zip:
[testng] 00:30:42,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:30:42,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:42,766 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-02_00-30-42.log]
[testng] 00:30:42,766 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9797dbd - End of configuration.
[testng] [2024-12-02 00:30:45,540] [pool-1-thread-9] Initializing /data/imagej/4D-Stack(256x256x20x10).zip:
[testng] 00:30:45,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:30:45,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:45,541 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-02_00-30-45.log]
[testng] 00:30:45,541 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1953d584 - End of configuration.
[testng] [2024-12-02 00:30:57,095] [pool-1-thread-8] Initializing /data/imagej/gel-electrophoresis.zip:
[testng] 00:30:57,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:30:57,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:57,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-02_00-30-57.log]
[testng] 00:30:57,096 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74097485 - End of configuration.
[testng] [2024-12-02 00:31:01,193] [pool-1-thread-7] Initializing /data/imagej/cheetah_256_8.tif.zip:
[testng] 00:31:01,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:31:01,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:01,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-02_00-31-01.log]
[testng] 00:31:01,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4459a37e - End of configuration.
[testng] [2024-12-02 00:31:04,277] [pool-1-thread-6] Initializing /data/imagej/xrays.zip:
[testng] 00:31:04,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:31:04,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:04,278 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-02_00-31-04.log]
[testng] 00:31:04,278 |-INFO in ch.qos.logback.core.sift.SiftProcessor@735679 - End of configuration.
[testng] [2024-12-02 00:31:06,113] [pool-1-thread-5] Initializing /data/imagej/confocal-stack.zip:
[testng] 00:31:06,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:31:06,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:06,115 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-02_00-31-06.log]
[testng] 00:31:06,115 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35d9306 - End of configuration.
[testng] [2024-12-02 00:31:17,820] [pool-1-thread-4] Initializing /data/imagej/FluorescentCells.zip:
[testng] 00:31:17,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:31:17,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:17,821 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-02_00-31-17.log]
[testng] 00:31:17,821 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a8cb65f - End of configuration.
[testng] [2024-12-02 00:31:20,273] [pool-1-thread-3] Initializing /data/imagej/fat-cells.zip:
[testng] 00:31:20,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:31:20,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:20,274 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-02_00-31-20.log]
[testng] 00:31:20,275 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3349a005 - End of configuration.
[testng] [2024-12-02 00:31:24,926] [pool-1-thread-2] Initializing /data/imagej/Rat_Hippocampal_Neuron2.zip:
[testng] 00:31:24,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:31:24,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:24,927 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-02_00-31-24.log]
[testng] 00:31:24,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@446e956 - End of configuration.
[testng] [2024-12-02 00:31:41,085] [pool-1-thread-1] Initializing /data/imagej/se3.zip:
[testng] [2024-12-02 00:31:55,542] [pool-1-thread-6] Initializing /data/imagej/RatBrain.zip:
[testng] [2024-12-02 00:32:00,049] [pool-1-thread-10] Initializing /data/imagej/blood-brain-barrier.zip:
[testng] [2024-12-02 00:32:11,670] [pool-1-thread-12] Initializing /data/imagej/Rat_Hippocampal_Neuron.zip:
[testng] [2024-12-02 00:32:17,713] [pool-1-thread-4] Initializing /data/imagej/scala-media.zip:
[testng] [2024-12-02 00:32:19,928] [pool-1-thread-7] Initializing /data/imagej/confocal-series.zip:
[testng] [2024-12-02 00:32:38,787] [pool-1-thread-6] Initializing /data/imagej/3D_Chromosome.zip:
[testng] [2024-12-02 00:32:40,881] [pool-1-thread-11] Initializing /data/imagej/flybrain.zip:
[testng] [2024-12-02 00:32:52,401] [pool-1-thread-2] Initializing /data/imagej/m51.zip:
[testng] [2024-12-02 00:32:53,795] [pool-1-thread-4] Initializing /data/samples/bat-cochlea-volume.zip:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1166, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 8 minutes 47 seconds
Finished: SUCCESS