Started by upstream project "BIOFORMATS-test-repo" build number 276
originally caused by:
Started by upstream project "Trigger" build number 297
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins3837989632891325965.sh
+ '[' gatan-dm2 = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_43518_merge_ci -v /uod/idr/repos/curated/gatan-dm2:/data -v /uod/idr-scratch/merge-ci/curated/gatan-dm2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:27:27,168 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:27:27,170 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 01:27:27,170 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:27:27,171 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:27:27,171 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:27:27,171 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:27:27,171 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:27:27,171 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:27:27,172 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:27:27,172 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:27:27,172 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:27:27,172 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:27:27,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:27:27,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:27:27,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:27:27,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:27:27,461 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:27:27,461 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:27:27,462 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:27:27,462 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:27:27,462 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 01:27:27,463 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 01:27:27,463 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 291 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-02 01:27:27,474] [main] java.version = 1.8.0_342
[testng] 01:27:27,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:27:27,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:27,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-02_01-27-27.log]
[testng] 01:27:27,527 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-02 01:27:27,529] [main] testng.directory = /data
[testng] [2024-12-02 01:27:27,529] [main] testng.configDirectory = /config
[testng] [2024-12-02 01:27:27,543] [main] testng.multiplier = 1.0
[testng] [2024-12-02 01:27:27,543] [main] testng.in-memory = false
[testng] [2024-12-02 01:27:27,543] [main] testng.allow-missing = false
[testng] [2024-12-02 01:27:27,543] [main] user.language = fr
[testng] [2024-12-02 01:27:27,544] [main] user.country = FR
[testng] [2024-12-02 01:27:27,544] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-02 01:27:44,617] [main] ----------------------------------------
[testng] [2024-12-02 01:27:44,617] [main] Total files: 25
[testng] [2024-12-02 01:27:44,617] [main] Scan time: 17.073 s (682 ms/file)
[testng] [2024-12-02 01:27:44,617] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-02 01:27:59,382] [pool-1-thread-1] Initializing /data/imagic/TEM 10118.dm2:
[testng] 01:27:59,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:27:59,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:59,384 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-02_01-27-59.log]
[testng] 01:27:59,384 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ce84412 - End of configuration.
[testng] [2024-12-02 01:27:59,621] [pool-1-thread-12] Initializing /data/pang/DLMeD2E1_010500x03.dm2:
[testng] 01:27:59,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:27:59,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:59,622 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-02_01-27-59.log]
[testng] 01:27:59,623 |-INFO in ch.qos.logback.core.sift.SiftProcessor@397a0286 - End of configuration.
[testng] [2024-12-02 01:27:59,841] [pool-1-thread-11] Initializing /data/pang/signed:
[testng] 01:27:59,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:27:59,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:59,842 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-02_01-27-59.log]
[testng] 01:27:59,842 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c15249a - End of configuration.
[testng] [2024-12-02 01:28:00,160] [pool-1-thread-10] Initializing /data/imagic/not read correctly/Zucchini_preview.png:
[testng] 01:28:00,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:28:00,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:00,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-02_01-28-00.log]
[testng] 01:28:00,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fa5d23e - End of configuration.
[testng] [2024-12-02 01:28:00,212] [pool-1-thread-9] Initializing /data/imagic/not read correctly/Zucchini.dm2:
[testng] 01:28:00,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:28:00,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:00,213 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-02_01-28-00.log]
[testng] 01:28:00,213 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b3c6e89 - End of configuration.
[testng] [2024-12-02 01:28:00,423] [pool-1-thread-8] Initializing /data/pang/screen capture of metadata/tem_dm_microscope_info.png:
[testng] 01:28:00,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:28:00,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:00,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-02_01-28-00.log]
[testng] 01:28:00,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@766303aa - End of configuration.
[testng] [2024-12-02 01:28:00,458] [pool-1-thread-7] Initializing /data/pang/screen capture of metadata/tem_dm_keywords_info.png:
[testng] 01:28:00,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:28:00,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:00,459 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-02_01-28-00.log]
[testng] 01:28:00,459 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4308461a - End of configuration.
[testng] [2024-12-02 01:28:00,497] [pool-1-thread-6] Initializing /data/imagic/1-1.dm2:
[testng] 01:28:00,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:28:00,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:00,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-02_01-28-00.log]
[testng] 01:28:00,499 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b6d84ce - End of configuration.
[testng] [2024-12-02 01:28:00,704] [pool-1-thread-5] Initializing /data/pang/screen capture of metadata/tem_dm_general_info.png:
[testng] 01:28:00,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:28:00,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:00,706 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-02_01-28-00.log]
[testng] 01:28:00,706 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53cab8a9 - End of configuration.
[testng] [2024-12-02 01:28:00,759] [pool-1-thread-4] Initializing /data/pang/unproc-auto:
[testng] 01:28:00,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:28:00,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:00,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-02_01-28-00.log]
[testng] 01:28:00,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49f82dc1 - End of configuration.
[testng] [2024-12-02 01:28:01,006] [pool-1-thread-3] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info2.png:
[testng] 01:28:01,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:28:01,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:01,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-02_01-28-01.log]
[testng] 01:28:01,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7054967c - End of configuration.
[testng] [2024-12-02 01:28:01,040] [pool-1-thread-2] Initializing /data/pang/grating025k.dm2:
[testng] 01:28:01,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:28:01,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:01,041 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-02_01-28-01.log]
[testng] 01:28:01,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2da123a8 - End of configuration.
[testng] [2024-12-02 01:28:03,867] [pool-1-thread-10] Initializing /data/pang/10500x-o4:
[testng] [2024-12-02 01:28:04,108] [pool-1-thread-7] Initializing /data/imagic/Histiocyte in Skin Dermis.dm2:
[testng] [2024-12-02 01:28:04,339] [pool-1-thread-5] Initializing /data/imagic/not read correctly/Abeta Moon_preview.png:
[testng] [2024-12-02 01:28:04,374] [pool-1-thread-3] Initializing /data/imagic/not read correctly/Abeta Moon.dm2:
[testng] [2024-12-02 01:28:04,602] [pool-1-thread-8] Initializing /data/imagic/13008.dm2:
[testng] [2024-12-02 01:28:05,104] [pool-1-thread-4] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info1.png:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 45 seconds
Finished: SUCCESS