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Started by upstream project "BIOFORMATS-test-repo" build number 277 originally caused by: Started by upstream project "Trigger" build number 298 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins13059472101470765262.sh + '[' gatan = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_43618_merge_ci -v /uod/idr/repos/curated/gatan:/data -v /uod/idr-scratch/merge-ci/curated/gatan:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:22:03,863 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:22:03,865 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 00:22:03,865 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:03,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:03,866 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:22:03,867 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:22:03,867 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:22:03,867 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:03,868 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:03,868 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:22:03,869 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:22:03,869 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:22:04,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:22:04,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:22:04,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:22:04,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:22:04,088 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:22:04,088 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:22:04,088 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:22:04,089 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:22:04,089 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 00:22:04,090 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 00:22:04,090 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 222 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-03 00:22:04,100] [main] java.version = 11.0.16 [testng] 00:22:04,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:22:04,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:04,151 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-03_00-22-04.log] [testng] 00:22:04,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-12-03 00:22:04,155] [main] testng.directory = /data [testng] [2024-12-03 00:22:04,155] [main] testng.configDirectory = /config [testng] [2024-12-03 00:22:04,165] [main] testng.multiplier = 1.0 [testng] [2024-12-03 00:22:04,167] [main] testng.in-memory = false [testng] [2024-12-03 00:22:04,167] [main] testng.allow-missing = false [testng] [2024-12-03 00:22:04,167] [main] user.language = en [testng] [2024-12-03 00:22:04,167] [main] user.country = ${user.country} [testng] [2024-12-03 00:22:04,167] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-03 00:22:06,619] [main] ---------------------------------------- [testng] [2024-12-03 00:22:06,619] [main] Total files: 103 [testng] [2024-12-03 00:22:06,619] [main] Scan time: 2.451 s (23 ms/file) [testng] [2024-12-03 00:22:06,619] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 98 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-03 00:22:20,865] [pool-1-thread-1] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.dm3: [testng] 00:22:20,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:22:20,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:20,867 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-03_00-22-20.log] [testng] 00:22:20,868 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dc9fc56 - End of configuration. [testng] [2024-12-03 00:22:20,909] [pool-1-thread-12] Initializing /data/jay/smallerfile.dm3: [testng] 00:22:20,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:22:20,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:20,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-03_00-22-20.log] [testng] 00:22:20,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7447d428 - End of configuration. [testng] [2024-12-03 00:22:20,979] [pool-1-thread-11] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-96x96.tif: [testng] 00:22:20,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:22:20,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:20,980 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-03_00-22-20.log] [testng] 00:22:20,981 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12eb1d9a - End of configuration. [testng] [2024-12-03 00:22:21,249] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0001.dm4: [testng] 00:22:21,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:22:21,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:21,250 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-03_00-22-21.log] [testng] 00:22:21,251 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10221a1d - End of configuration. [testng] [2024-12-03 00:22:21,297] [pool-1-thread-9] Initializing /data/jay/biosamplefullframe.dm3: [testng] 00:22:21,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:22:21,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:21,298 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-03_00-22-21.log] [testng] 00:22:21,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@511e2292 - End of configuration. [testng] [2024-12-03 00:22:21,345] [pool-1-thread-8] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-363.dm3: [testng] 00:22:21,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:22:21,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:21,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-03_00-22-21.log] [testng] 00:22:21,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5210357d - End of configuration. [testng] [2024-12-03 00:22:21,424] [pool-1-thread-7] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] 00:22:21,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:22:21,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:21,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-03_00-22-21.log] [testng] 00:22:21,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@566e32b9 - End of configuration. [testng] [2024-12-03 00:22:21,825] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0014.dm4: [testng] 00:22:21,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:22:21,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:21,826 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-03_00-22-21.log] [testng] 00:22:21,827 |-INFO in ch.qos.logback.core.sift.SiftProcessor@84bc4d2 - End of configuration. [testng] [2024-12-03 00:22:21,904] [pool-1-thread-5] Initializing /data/public/imagesc-36590/SmallMontage0008.dm4: [testng] 00:22:21,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:22:21,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:21,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-03_00-22-21.log] [testng] 00:22:21,906 |-INFO in ch.qos.logback.core.sift.SiftProcessor@551a3e8a - End of configuration. [testng] [2024-12-03 00:22:21,993] [pool-1-thread-4] Initializing /data/melissa/annotation-test.tif: [testng] 00:22:21,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:22:21,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:21,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-03_00-22-21.log] [testng] 00:22:21,995 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a7d87d0 - End of configuration. [testng] [2024-12-03 00:22:22,223] [pool-1-thread-3] Initializing /data/jay/Carbon.34.dm3: [testng] 00:22:22,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:22:22,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:22,224 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-03_00-22-22.log] [testng] 00:22:22,225 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dc9e566 - End of configuration. [testng] [2024-12-03 00:22:22,265] [pool-1-thread-2] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0046.dm4: [testng] 00:22:22,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:22:22,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:22,266 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-03_00-22-22.log] [testng] 00:22:22,266 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37ba8f6a - End of configuration. [testng] [2024-12-03 00:22:25,768] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0017.dm4: [testng] [2024-12-03 00:22:25,994] [pool-1-thread-12] Initializing /data/samples/mode-metadata/mode_format_test.dm3: [testng] [2024-12-03 00:22:26,631] [pool-1-thread-10] Initializing /data/public/EMPIAR/EMPIAR-10013/BGal_000438_frames.dm4: [testng] [2024-12-03 00:22:26,694] [pool-1-thread-6] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0047.dm4: [testng] [2024-12-03 00:22:27,090] [pool-1-thread-4] Initializing /data/jay/dnasample.tif: [testng] [2024-12-03 00:22:27,843] [pool-1-thread-11] Initializing /data/imagesc-3719/Heart_BSE_slice_0019.dm4: [testng] [2024-12-03 00:22:29,204] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0019.dm4: [testng] [2024-12-03 00:22:29,301] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0005.dm4: [testng] [2024-12-03 00:22:29,379] [pool-1-thread-3] Initializing /data/jay/DMtest2.dm3: [testng] [2024-12-03 00:22:29,446] [pool-1-thread-1] Initializing /data/public/imagesc-36590/SmallMontage0004.dm4: [testng] [2024-12-03 00:22:29,621] [pool-1-thread-5] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0045.dm4: [testng] [2024-12-03 00:22:31,088] [pool-1-thread-1] Initializing /data/jay/recAmaghi.dm3: [testng] [2024-12-03 00:22:31,451] [pool-1-thread-12] Initializing /data/jay/ViewDMtest.dm3: [testng] [2024-12-03 00:22:31,843] [pool-1-thread-9] Initializing /data/jay/samples/APC2a-e3.dm3: [testng] [2024-12-03 00:22:31,973] [pool-1-thread-8] Initializing /data/samples/test-tiles.dm3: [testng] [2024-12-03 00:22:32,077] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0016.dm4: [testng] [2024-12-03 00:22:32,155] [pool-1-thread-10] Initializing /data/qa-21647/Sample2_L1-0002.dm4: [testng] [2024-12-03 00:22:32,762] [pool-1-thread-11] Initializing /data/nuno/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-12-03 00:22:33,009] [pool-1-thread-8] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-256x256.tif: [testng] [2024-12-03 00:22:33,591] [pool-1-thread-9] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-12-03 00:22:34,108] [pool-1-thread-3] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.dm3: [testng] [2024-12-03 00:22:34,222] [pool-1-thread-10] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0049.dm4: [testng] [2024-12-03 00:22:34,684] [pool-1-thread-7] Initializing /data/public/imagesc-36590/SmallMontage0006.dm4: [testng] [2024-12-03 00:22:34,901] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0015.dm4: [testng] [2024-12-03 00:22:35,061] [pool-1-thread-12] Initializing /data/jayne/AM-2/MonGb3-S1.dm3: [testng] [2024-12-03 00:22:35,595] [pool-1-thread-11] Initializing /data/imagesc-3719/Prefix_BSE_slice_0001.dm4: [testng] [2024-12-03 00:22:35,903] [pool-1-thread-4] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0051.dm4: [testng] [2024-12-03 00:22:36,661] [pool-1-thread-7] Initializing /data/jayne/AM-2/MonGb2-S7.dm3: [testng] [2024-12-03 00:22:37,912] [pool-1-thread-8] Initializing /data/jay/samples/APC2a-e3.tif: [testng] [2024-12-03 00:22:38,563] [pool-1-thread-1] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-12-03 00:22:39,516] [pool-1-thread-3] Initializing /data/melissa/annotation-test.dm3: [testng] [2024-12-03 00:22:39,956] [pool-1-thread-12] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-1020x1020.tif: [testng] [2024-12-03 00:22:41,248] [pool-1-thread-3] Initializing /data/nuno/Prefix_3VBSED_stack_30_slice_0290.dm3: [testng] [2024-12-03 00:22:42,303] [pool-1-thread-2] Initializing /data/ofra/lowloss.dm3: [testng] [2024-12-03 00:22:42,398] [pool-1-thread-7] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0050.dm4: [testng] [2024-12-03 00:22:42,532] [pool-1-thread-9] Initializing /data/qa-8007/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-12-03 00:22:43,288] [pool-1-thread-8] Initializing /data/jay/recAmag6500dm.dm3: [testng] [2024-12-03 00:22:44,026] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0013.dm4: [testng] [2024-12-03 00:22:44,725] [pool-1-thread-9] Initializing /data/jay/graphitedm3.dm3: [testng] [2024-12-03 00:22:45,436] [pool-1-thread-12] Initializing /data/public/imagesc-36590/SmallMontage0007.dm4: [testng] [2024-12-03 00:22:47,144] [pool-1-thread-12] Initializing /data/jay/biosamplefullframetif.tif: [testng] [2024-12-03 00:22:47,994] [pool-1-thread-1] Initializing /data/qa-11392/Example_Gatan_File.dm4: [testng] [2024-12-03 00:22:48,275] [pool-1-thread-5] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-12-03 00:22:49,284] [pool-1-thread-6] Initializing /data/jay/dnasample1.dm3: [testng] [2024-12-03 00:22:49,435] [pool-1-thread-2] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-799x799.tif: [testng] [2024-12-03 00:22:50,702] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0008.dm4: [testng] [2024-12-03 00:22:50,849] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0003.dm4: [testng] [2024-12-03 00:22:51,025] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0002.dm4: [testng] [2024-12-03 00:22:51,558] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0007.dm4: [testng] [2024-12-03 00:22:52,076] [pool-1-thread-10] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-12-03 00:22:53,275] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0000.dm4: [testng] [2024-12-03 00:22:54,333] [pool-1-thread-6] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.tif: [testng] [2024-12-03 00:22:55,753] [pool-1-thread-9] Initializing /data/jayne/AM-2/MonGb3-S3.dm3: [testng] [2024-12-03 00:22:55,921] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0012.dm4: [testng] [2024-12-03 00:22:56,101] [pool-1-thread-3] Initializing /data/jay/samples/APC2a-e5.dm3: [testng] [2024-12-03 00:22:56,247] [pool-1-thread-8] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0053.dm4: [testng] [2024-12-03 00:22:57,311] [pool-1-thread-4] Initializing /data/public/imagesc-36590/SmallMontage0002.dm4: [testng] [2024-12-03 00:22:57,485] [pool-1-thread-7] Initializing /data/thorsten/60kx_HAADF_03.dm3: [testng] [2024-12-03 00:22:59,125] [pool-1-thread-2] Initializing /data/qa-7642/8.dm4: [testng] [2024-12-03 00:22:59,290] [pool-1-thread-3] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0052.dm4: [testng] [2024-12-03 00:22:59,820] [pool-1-thread-11] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0048.dm4: [testng] [2024-12-03 00:23:00,224] [pool-1-thread-4] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-128x128.tif: [testng] [2024-12-03 00:23:01,395] [pool-1-thread-7] Initializing /data/public/imagesc-36590/SmallMontage0005.dm4: [testng] [2024-12-03 00:23:01,568] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0004.dm4: [testng] [2024-12-03 00:23:02,097] [pool-1-thread-9] Initializing /data/qa-21761/example.dm4: [testng] [2024-12-03 00:23:02,948] [pool-1-thread-5] Initializing /data/jayne/AM-2/MonGb2-S8.dm3: [testng] [2024-12-03 00:23:03,996] [pool-1-thread-1] Initializing /data/public/imagesc-36590/SmallMontage0003.dm4: [testng] [2024-12-03 00:23:04,276] [pool-1-thread-7] Initializing /data/jay/samples/APC2a-e4.tif: [testng] [2024-12-03 00:23:05,491] [pool-1-thread-6] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.dm4: [testng] [2024-12-03 00:23:06,265] [pool-1-thread-2] Initializing /data/jayne/AM-2/MonGb2-S9.dm3: [testng] [2024-12-03 00:23:06,613] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0011.dm4: [testng] [2024-12-03 00:23:06,940] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0010.dm4: [testng] [2024-12-03 00:23:07,145] [pool-1-thread-12] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-480x480.tif: [testng] [2024-12-03 00:23:08,311] [pool-1-thread-1] Initializing /data/jay/camtest1.dm3: [testng] [2024-12-03 00:23:09,127] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0009.dm4: [testng] [2024-12-03 00:23:09,820] [pool-1-thread-5] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362-smaller.tif: [testng] [2024-12-03 00:23:11,626] [pool-1-thread-4] Initializing /data/jay/samples/APC2a-e4.dm3: [testng] [2024-12-03 00:23:11,966] [pool-1-thread-10] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-12-03 00:23:13,137] [pool-1-thread-9] Initializing /data/public/imagesc-36590/SmallMontage0001.dm4: [testng] [2024-12-03 00:23:13,477] [pool-1-thread-2] Initializing /data/chip/Nanogold-1.dm3: [testng] [2024-12-03 00:23:13,676] [pool-1-thread-8] Initializing /data/jay/DMtest.dm3: [testng] [2024-12-03 00:23:14,109] [pool-1-thread-6] Initializing /data/ofra/Co on INT 28-12-10.11.dm3: [testng] [2024-12-03 00:23:14,369] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0006.dm4: [testng] [2024-12-03 00:23:14,807] [pool-1-thread-7] Initializing /data/public/imagesc-36590/SmallMontage0000.dm4: [testng] [2024-12-03 00:23:15,527] [pool-1-thread-4] Initializing /data/jay/samples/APC2a-e5.tif: [testng] [2024-12-03 00:23:16,643] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0018.dm4: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 5194, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 23 seconds Finished: SUCCESS