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Started by upstream project "BIOFORMATS-test-repo" build number 277
originally caused by:
 Started by upstream project "Trigger" build number 298
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins163219436176732896.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_43642_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 00:28:31,704 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 00:28:31,706 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 00:28:31,706 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:28:31,708 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:28:31,709 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 00:28:31,709 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 00:28:31,709 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 00:28:31,709 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:28:31,710 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:28:31,711 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 00:28:31,711 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 00:28:31,712 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 00:28:31,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 00:28:31,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 00:28:31,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 00:28:31,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 00:28:31,915 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 00:28:31,915 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 00:28:31,915 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 00:28:31,916 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 00:28:31,916 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 00:28:31,917 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 00:28:31,917 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 207 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-12-03 00:28:31,928] [main] java.version = 11.0.16
   [testng] 00:28:31,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 00:28:31,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:28:31,975 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-03_00-28-31.log]
   [testng] 00:28:31,976 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-12-03 00:28:31,978] [main] testng.directory = /data
   [testng] [2024-12-03 00:28:31,979] [main] testng.configDirectory = /config
   [testng] [2024-12-03 00:28:31,989] [main] testng.multiplier = 1.0
   [testng] [2024-12-03 00:28:31,990] [main] testng.in-memory = false
   [testng] [2024-12-03 00:28:31,990] [main] testng.allow-missing = false
   [testng] [2024-12-03 00:28:31,990] [main] user.language = en
   [testng] [2024-12-03 00:28:31,990] [main] user.country = ${user.country}
   [testng] [2024-12-03 00:28:31,990] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-12-03 00:31:57,708] [main] ----------------------------------------
   [testng] [2024-12-03 00:31:57,709] [main] Total files: 226
   [testng] [2024-12-03 00:31:57,709] [main] Scan time: 205.718 s (910 ms/file)
   [testng] [2024-12-03 00:31:57,709] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 28 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-12-03 00:34:41,582] [pool-1-thread-1] Initializing /data/fluoview/Sample_XT.tif: 
   [testng] 00:34:41,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 00:34:41,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:34:41,585 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-03_00-34-41.log]
   [testng] 00:34:41,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e84675c - End of configuration.
   [testng] [2024-12-03 00:34:42,196] [pool-1-thread-12] Initializing /data/iplab/Blend_DIC.IPL: 
   [testng] 00:34:42,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 00:34:42,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:34:42,198 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-03_00-34-42.log]
   [testng] 00:34:42,198 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b486f6 - End of configuration.
   [testng] [2024-12-03 00:34:42,294] [pool-1-thread-11] Initializing /data/iplab/Color Histology.IPL: 
   [testng] 00:34:42,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 00:34:42,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:34:42,296 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-03_00-34-42.log]
   [testng] 00:34:42,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@481ffd45 - End of configuration.
   [testng] [2024-12-03 00:34:42,380] [pool-1-thread-10] Initializing /data/iplab/Color Image.IPL: 
   [testng] 00:34:42,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 00:34:42,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:34:42,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-03_00-34-42.log]
   [testng] 00:34:42,381 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61ae5508 - End of configuration.
   [testng] [2024-12-03 00:34:42,458] [pool-1-thread-9] Initializing /data/iplab/Chromosomes.IPL: 
   [testng] 00:34:42,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 00:34:42,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:34:42,459 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-03_00-34-42.log]
   [testng] 00:34:42,460 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2551f980 - End of configuration.
   [testng] [2024-12-03 00:34:42,537] [pool-1-thread-8] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: 
   [testng] 00:34:42,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 00:34:42,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:34:42,538 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-03_00-34-42.log]
   [testng] 00:34:42,538 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73486367 - End of configuration.
   [testng] [2024-12-03 00:34:42,654] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZTCh.tif: 
   [testng] 00:34:42,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 00:34:42,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:34:42,655 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-03_00-34-42.log]
   [testng] 00:34:42,655 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ddb6886 - End of configuration.
   [testng] [2024-12-03 00:34:43,150] [pool-1-thread-6] Initializing /data/iplab/16Bit XRay.IPL: 
   [testng] 00:34:43,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 00:34:43,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:34:43,151 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-03_00-34-43.log]
   [testng] 00:34:43,151 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50e9e934 - End of configuration.
   [testng] [2024-12-03 00:34:43,242] [pool-1-thread-5] Initializing /data/iplab/Blend_Fitc.IPL: 
   [testng] 00:34:43,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 00:34:43,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:34:43,242 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-03_00-34-43.log]
   [testng] 00:34:43,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@538366a3 - End of configuration.
   [testng] [2024-12-03 00:34:43,337] [pool-1-thread-4] Initializing /data/fluoview/SpineAnimation.tif: 
   [testng] 00:34:43,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 00:34:43,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:34:43,338 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-03_00-34-43.log]
   [testng] 00:34:43,350 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1190531a - End of configuration.
   [testng] [2024-12-03 00:34:44,006] [pool-1-thread-3] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: 
   [testng] 00:34:44,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 00:34:44,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:34:44,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-03_00-34-44.log]
   [testng] 00:34:44,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e4dfe4 - End of configuration.
   [testng] [2024-12-03 00:34:44,522] [pool-1-thread-2] Initializing /data/iplab/Blend_Tritc.IPL: 
   [testng] 00:34:44,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 00:34:44,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:34:44,523 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-03_00-34-44.log]
   [testng] 00:34:44,523 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f880366 - End of configuration.
   [testng] [2024-12-03 00:34:47,401] [pool-1-thread-11] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: 
   [testng] [2024-12-03 00:34:47,553] [pool-1-thread-9] Initializing /data/fluoview/Sample_TwoCH.TIF: 
   [testng] [2024-12-03 00:34:48,234] [pool-1-thread-6] Initializing /data/fluoview/Sample_XYZ.TIF: 
   [testng] [2024-12-03 00:34:48,878] [pool-1-thread-10] Initializing /data/iplab/Blend_Final.IPL: 
   [testng] [2024-12-03 00:34:48,965] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif: 
   [testng] [2024-12-03 00:34:49,527] [pool-1-thread-12] Initializing /data/iplab/3t3 Cell.IPL: 
   [testng] [2024-12-03 00:34:49,610] [pool-1-thread-8] Initializing /data/fluoview/Sample_XYT.TIF: 
   [testng] [2024-12-03 00:34:50,156] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: 
   [testng] [2024-12-03 00:34:52,260] [pool-1-thread-12] Initializing /data/fluoview/Sample_ThreeCH.TIF: 
   [testng] [2024-12-03 00:34:52,972] [pool-1-thread-10] Initializing /data/fluoview/SpineAnimation.avi: 
   [testng] [2024-12-03 00:34:53,214] [pool-1-thread-7] Initializing /data/iplab/Blend_Dapi.IPL: 
   [testng] [2024-12-03 00:34:53,313] [pool-1-thread-4] Initializing /data/fluoview/sample_labled_XYZCh.tif: 
   [testng] [2024-12-03 00:34:53,801] [pool-1-thread-11] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: 
   [testng] [2024-12-03 00:34:54,418] [pool-1-thread-1] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: 
   [testng] [2024-12-03 00:34:56,244] [pool-1-thread-7] Initializing /data/iplab/Actin.IPL: 
   [testng] [2024-12-03 00:34:56,839] [pool-1-thread-1] Initializing /data/iplab/10x Blood and Bacteria.IPL: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1484, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 6 minutes 35 seconds
Finished: SUCCESS