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Started by upstream project "BIOFORMATS-test-repo" build number 277 originally caused by: Started by upstream project "Trigger" build number 298 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins13237359702864740040.sh + '[' targa = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_43653_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:38:40,186 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:38:40,187 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 00:38:40,187 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:38:40,188 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:38:40,189 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:38:40,189 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:38:40,189 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:38:40,189 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:38:40,190 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:38:40,190 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:38:40,191 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:38:40,191 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:38:40,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:38:40,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:38:40,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:38:40,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:38:40,380 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:38:40,380 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:38:40,380 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:38:40,380 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:38:40,381 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 00:38:40,381 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 00:38:40,381 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 191 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-03 00:38:40,390] [main] java.version = 11.0.16 [testng] 00:38:40,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:38:40,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:40,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-03_00-38-40.log] [testng] 00:38:40,434 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-12-03 00:38:40,436] [main] testng.directory = /data [testng] [2024-12-03 00:38:40,436] [main] testng.configDirectory = /config [testng] [2024-12-03 00:38:40,445] [main] testng.multiplier = 1.0 [testng] [2024-12-03 00:38:40,446] [main] testng.in-memory = false [testng] [2024-12-03 00:38:40,446] [main] testng.allow-missing = false [testng] [2024-12-03 00:38:40,446] [main] user.language = en [testng] [2024-12-03 00:38:40,447] [main] user.country = ${user.country} [testng] [2024-12-03 00:38:40,447] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-03 00:38:41,259] [main] ---------------------------------------- [testng] [2024-12-03 00:38:41,259] [main] Total files: 21 [testng] [2024-12-03 00:38:41,259] [main] Scan time: 0.812 s (38 ms/file) [testng] [2024-12-03 00:38:41,259] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-03 00:38:48,302] [pool-1-thread-1] Initializing /data/samples/XING_T24.TGA: [testng] 00:38:48,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:38:48,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:48,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-03_00-38-48.log] [testng] 00:38:48,305 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e32eaac - End of configuration. [testng] [2024-12-03 00:38:48,566] [pool-1-thread-12] Initializing /data/samples/FLAG_B24.TGA: [testng] 00:38:48,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:38:48,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:48,567 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-03_00-38-48.log] [testng] 00:38:48,567 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25d6fc1b - End of configuration. [testng] [2024-12-03 00:38:48,808] [pool-1-thread-11] Initializing /data/samples/MARBLES.TGA: [testng] 00:38:48,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:38:48,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:48,810 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-03_00-38-48.log] [testng] 00:38:48,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3235ed96 - End of configuration. [testng] [2024-12-03 00:38:49,068] [pool-1-thread-10] Initializing /data/samples/FLAG_T16.TGA: [testng] 00:38:49,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:38:49,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:49,069 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-03_00-38-49.log] [testng] 00:38:49,069 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2505476 - End of configuration. [testng] [2024-12-03 00:38:49,417] [pool-1-thread-9] Initializing /data/samples/UTC32.TGA: [testng] 00:38:49,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:38:49,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:49,418 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-03_00-38-49.log] [testng] 00:38:49,418 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62a54eee - End of configuration. [testng] [2024-12-03 00:38:49,760] [pool-1-thread-8] Initializing /data/samples/CCM8.TGA: [testng] 00:38:49,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:38:49,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:49,761 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-03_00-38-49.log] [testng] 00:38:49,761 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b95c134 - End of configuration. [testng] [2024-12-03 00:38:50,129] [pool-1-thread-7] Initializing /data/samples/UBW8.TGA: [testng] 00:38:50,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:38:50,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:50,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-03_00-38-50.log] [testng] 00:38:50,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45de9776 - End of configuration. [testng] [2024-12-03 00:38:50,450] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA: [testng] 00:38:50,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:38:50,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:50,451 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-03_00-38-50.log] [testng] 00:38:50,451 |-INFO in ch.qos.logback.core.sift.SiftProcessor@434888f3 - End of configuration. [testng] [2024-12-03 00:38:50,776] [pool-1-thread-5] Initializing /data/samples/XING_B24.TGA: [testng] 00:38:50,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:38:50,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:50,777 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-03_00-38-50.log] [testng] 00:38:50,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53afc15b - End of configuration. [testng] [2024-12-03 00:38:51,169] [pool-1-thread-4] Initializing /data/samples/FLAG_B16.TGA: [testng] 00:38:51,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:38:51,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:51,171 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-03_00-38-51.log] [testng] 00:38:51,171 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4905d351 - End of configuration. [testng] [2024-12-03 00:38:51,510] [pool-1-thread-3] Initializing /data/samples/CTC24.TGA: [testng] 00:38:51,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:38:51,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:51,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-03_00-38-51.log] [testng] 00:38:51,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4487e9f1 - End of configuration. [testng] [2024-12-03 00:38:51,846] [pool-1-thread-2] Initializing /data/samples/FLAG_B32.TGA: [testng] 00:38:51,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:38:51,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:51,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-03_00-38-51.log] [testng] 00:38:51,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50302d11 - End of configuration. [testng] [2024-12-03 00:38:55,713] [pool-1-thread-8] Initializing /data/samples/UTC16.TGA: [testng] [2024-12-03 00:38:55,843] [pool-1-thread-9] Initializing /data/samples/XING_B32.TGA: [testng] [2024-12-03 00:38:55,976] [pool-1-thread-6] Initializing /data/samples/FLAG_T32.TGA: [testng] [2024-12-03 00:38:56,104] [pool-1-thread-4] Initializing /data/samples/UCM8.TGA: [testng] [2024-12-03 00:38:56,234] [pool-1-thread-12] Initializing /data/samples/CBW8.TGA: [testng] [2024-12-03 00:38:56,407] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA: [testng] [2024-12-03 00:38:56,582] [pool-1-thread-2] Initializing /data/samples/XING_B16.TGA: [testng] [2024-12-03 00:38:56,745] [pool-1-thread-5] Initializing /data/samples/UTC24.TGA: [testng] [2024-12-03 00:38:56,924] [pool-1-thread-1] Initializing /data/samples/XING_T32.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 seconds Finished: SUCCESS