Started by upstream project "BIOFORMATS-test-repo" build number 277
originally caused by:
Started by upstream project "Trigger" build number 298
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins16059785665090073639.sh
+ '[' apng = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_43742_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 03:15:41,452 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 03:15:41,454 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 03:15:41,454 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:15:41,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:15:41,455 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 03:15:41,456 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 03:15:41,456 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 03:15:41,456 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:15:41,456 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:15:41,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 03:15:41,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 03:15:41,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 03:15:41,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 03:15:41,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 03:15:41,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 03:15:41,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 03:15:41,647 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 03:15:41,647 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 03:15:41,647 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 03:15:41,647 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 03:15:41,647 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 03:15:41,648 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 03:15:41,648 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 192 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-03 03:15:41,657] [main] java.version = 11.0.16
[testng] 03:15:41,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:15:41,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:15:41,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-03_03-15-41.log]
[testng] 03:15:41,705 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-12-03 03:15:41,707] [main] testng.directory = /data
[testng] [2024-12-03 03:15:41,707] [main] testng.configDirectory = /config
[testng] [2024-12-03 03:15:41,717] [main] testng.multiplier = 1.0
[testng] [2024-12-03 03:15:41,718] [main] testng.in-memory = false
[testng] [2024-12-03 03:15:41,718] [main] testng.allow-missing = false
[testng] [2024-12-03 03:15:41,718] [main] user.language = en
[testng] [2024-12-03 03:15:41,718] [main] user.country = ${user.country}
[testng] [2024-12-03 03:15:41,718] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-03 03:15:42,447] [main] ----------------------------------------
[testng] [2024-12-03 03:15:42,448] [main] Total files: 21
[testng] [2024-12-03 03:15:42,448] [main] Scan time: 0.729 s (34 ms/file)
[testng] [2024-12-03 03:15:42,448] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-03 03:15:44,750] [pool-1-thread-1] Initializing /data/samples/daniel_coltri_one.png:
[testng] 03:15:44,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 03:15:44,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:15:44,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-03_03-15-44.log]
[testng] 03:15:44,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7632f50d - End of configuration.
[testng] [2024-12-03 03:15:44,839] [pool-1-thread-12] Initializing /data/samples/william_wong02.png:
[testng] 03:15:44,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 03:15:44,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:15:44,841 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-03_03-15-44.log]
[testng] 03:15:44,842 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22189a25 - End of configuration.
[testng] [2024-12-03 03:15:44,877] [pool-1-thread-11] Initializing /data/samples/spinfox.png:
[testng] 03:15:44,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 03:15:44,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:15:44,879 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-03_03-15-44.log]
[testng] 03:15:44,879 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5517ae99 - End of configuration.
[testng] [2024-12-03 03:15:44,913] [pool-1-thread-10] Initializing /data/samples/MoonPhases.png:
[testng] 03:15:44,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 03:15:44,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:15:44,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-03_03-15-44.log]
[testng] 03:15:44,914 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a27eab2 - End of configuration.
[testng] [2024-12-03 03:15:44,952] [pool-1-thread-9] Initializing /data/samples/Matrix.png:
[testng] 03:15:44,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 03:15:44,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:15:44,952 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-03_03-15-44.log]
[testng] 03:15:44,953 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bf2cf7 - End of configuration.
[testng] [2024-12-03 03:15:44,985] [pool-1-thread-8] Initializing /data/samples/Sun.png:
[testng] 03:15:44,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 03:15:44,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:15:44,986 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-03_03-15-44.log]
[testng] 03:15:44,986 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34210f65 - End of configuration.
[testng] [2024-12-03 03:15:45,031] [pool-1-thread-7] Initializing /data/qa-7473/n.tif:
[testng] 03:15:45,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 03:15:45,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:15:45,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-03_03-15-45.log]
[testng] 03:15:45,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@191090b7 - End of configuration.
[testng] [2024-12-03 03:15:45,988] [pool-1-thread-6] Initializing /data/samples/phug_logo.png:
[testng] 03:15:45,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 03:15:45,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:15:45,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-03_03-15-45.log]
[testng] 03:15:45,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c9dc661 - End of configuration.
[testng] [2024-12-03 03:15:46,028] [pool-1-thread-5] Initializing /data/samples/monkey_apng.png:
[testng] 03:15:46,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 03:15:46,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:15:46,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-03_03-15-46.log]
[testng] 03:15:46,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@417bbda - End of configuration.
[testng] [2024-12-03 03:15:46,071] [pool-1-thread-4] Initializing /data/samples/william_wong05.png:
[testng] 03:15:46,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 03:15:46,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:15:46,072 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-03_03-15-46.log]
[testng] 03:15:46,072 |-INFO in ch.qos.logback.core.sift.SiftProcessor@166c846c - End of configuration.
[testng] [2024-12-03 03:15:46,113] [pool-1-thread-3] Initializing /data/colin/test.sfstdge.png:
[testng] 03:15:46,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 03:15:46,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:15:46,115 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-03_03-15-46.log]
[testng] 03:15:46,115 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e8f3ffa - End of configuration.
[testng] [2024-12-03 03:15:46,153] [pool-1-thread-2] Initializing /data/samples/PhugAnimation3.png:
[testng] 03:15:46,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 03:15:46,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:15:46,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-03_03-15-46.log]
[testng] 03:15:46,154 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59fcacd1 - End of configuration.
[testng] [2024-12-03 03:15:48,167] [pool-1-thread-4] Initializing /data/samples/orbit.png:
[testng] [2024-12-03 03:15:48,211] [pool-1-thread-3] Initializing /data/samples/joanna_viera01.png:
[testng] [2024-12-03 03:15:48,681] [pool-1-thread-6] Initializing /data/samples/daniel_coltri_two.png:
[testng] [2024-12-03 03:15:48,722] [pool-1-thread-5] Initializing /data/qa-7473/x.png:
[testng] [2024-12-03 03:15:48,757] [pool-1-thread-2] Initializing /data/samples/william_wong01.png:
[testng] [2024-12-03 03:15:48,796] [pool-1-thread-12] Initializing /data/samples/chompy2.png:
[testng] [2024-12-03 03:15:48,833] [pool-1-thread-8] Initializing /data/samples/atom.png:
[testng] [2024-12-03 03:15:48,881] [pool-1-thread-1] Initializing /data/samples/william_wong04.png:
[testng] [2024-12-03 03:15:48,984] [pool-1-thread-10] Initializing /data/samples/StarV838.png:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 14 seconds
Finished: SUCCESS