Started by upstream project "BIOFORMATS-test-repo" build number 279 originally caused by: Started by upstream project "Trigger" build number 299 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins12924674574371011407.sh + '[' leica-tcs = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_44086_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:37:17,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:37:17,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:37:17,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:37:17,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:37:17,939 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:37:17,939 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:37:17,939 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:37:17,940 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:37:17,940 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5d534f5d - End of configuration. [testng] 03:37:17,940 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@51c668e3 - Registering current configuration as safe fallback point [testng] 03:37:17,940 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2e6a8155 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 404 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-04 03:37:17,949] [main] java.version = 17.0.2 [testng] 03:37:17,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:37:17,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:37:18,306 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-04_03-37-18.log] [testng] 03:37:18,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-04 03:37:18,490] [main] testng.directory = /data [testng] [2024-12-04 03:37:18,491] [main] testng.configDirectory = /config [testng] [2024-12-04 03:37:18,528] [main] testng.multiplier = 1.0 [testng] [2024-12-04 03:37:18,529] [main] testng.in-memory = false [testng] [2024-12-04 03:37:18,529] [main] testng.allow-missing = false [testng] [2024-12-04 03:37:18,529] [main] user.language = en [testng] [2024-12-04 03:37:18,529] [main] user.country = ${user.country} [testng] [2024-12-04 03:37:18,529] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-04 03:37:34,154] [main] ---------------------------------------- [testng] [2024-12-04 03:37:34,154] [main] Total files: 944 [testng] [2024-12-04 03:37:34,154] [main] Scan time: 15.625 s (16 ms/file) [testng] [2024-12-04 03:37:34,154] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 15 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-04 03:39:14,137] [pool-1-thread-1] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif: [testng] 03:39:14,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:39:14,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:39:14,139 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-04_03-39-14.log] [testng] 03:39:14,139 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fb544c9 - End of configuration. [testng] [2024-12-04 03:39:16,030] [pool-1-thread-12] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif: [testng] 03:39:16,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:39:16,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:39:16,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-04_03-39-16.log] [testng] 03:39:16,031 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8cd8ced - End of configuration. [testng] [2024-12-04 03:39:17,672] [pool-1-thread-11] Initializing /data/stjude/Antoday1dblmysglGRP.tif: [testng] 03:39:17,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:39:17,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:39:17,672 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-04_03-39-17.log] [testng] 03:39:17,673 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21e2bb20 - End of configuration. [testng] [2024-12-04 03:39:19,072] [pool-1-thread-10] Initializing /data/brian/Series002_z01.tif: [testng] 03:39:19,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:39:19,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:39:19,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-04_03-39-19.log] [testng] 03:39:19,074 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68827a16 - End of configuration. [testng] [2024-12-04 03:39:21,147] [pool-1-thread-9] Initializing /data/stjude/AntoDay1dblGRP.tif: [testng] 03:39:21,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:39:21,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:39:21,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-04_03-39-21.log] [testng] 03:39:21,149 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7874dc53 - End of configuration. [testng] [2024-12-04 03:39:22,594] [pool-1-thread-8] Initializing /data/martin/Series028_z00_ch00.tif: [testng] 03:39:22,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:39:22,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:39:22,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-04_03-39-22.log] [testng] 03:39:22,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@101f6833 - End of configuration. [testng] [2024-12-04 03:39:24,523] [pool-1-thread-7] Initializing /data/stjude/AntoDay4dblmy2GRP.tif: [testng] 03:39:24,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:39:24,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:39:24,524 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-04_03-39-24.log] [testng] 03:39:24,524 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45157c8c - End of configuration. [testng] [2024-12-04 03:39:26,156] [pool-1-thread-6] Initializing /data/stjude/Antoday1dblcatsglGRP.tif: [testng] 03:39:26,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:39:26,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:39:26,157 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-04_03-39-26.log] [testng] 03:39:26,158 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b0f6c43 - End of configuration. [testng] [2024-12-04 03:39:27,516] [pool-1-thread-5] Initializing /data/stjude/AntoDayzerocy3GRP.tif: [testng] 03:39:27,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:39:27,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:39:27,517 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-04_03-39-27.log] [testng] 03:39:27,517 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f2ffc16 - End of configuration. [testng] [2024-12-04 03:39:29,087] [pool-1-thread-4] Initializing /data/stjude/AntoDay4dblmyGRP.tif: [testng] 03:39:29,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:39:29,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:39:29,088 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-04_03-39-29.log] [testng] 03:39:29,088 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75985c42 - End of configuration. [testng] [2024-12-04 03:39:30,507] [pool-1-thread-3] Initializing /data/stjude/AntoDayzerocy3OVP.tif: [testng] 03:39:30,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:39:30,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:39:30,508 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-04_03-39-30.log] [testng] 03:39:30,508 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e474f58 - End of configuration. [testng] [2024-12-04 03:39:32,018] [pool-1-thread-2] Initializing /data/brian/Series002_z00_ch00.tif: [testng] 03:39:32,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:39:32,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:39:32,019 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-04_03-39-32.log] [testng] 03:39:32,020 |-INFO in ch.qos.logback.core.sift.SiftProcessor@402656e9 - End of configuration. [testng] [2024-12-04 03:39:46,563] [pool-1-thread-1] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif: [testng] [2024-12-04 03:40:41,918] [pool-1-thread-6] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF: [testng] [2024-12-04 03:40:43,202] [pool-1-thread-10] Initializing /data/primate/Leica_Image.tif: [testng] 04:48:09,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:48:09,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:48:09,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-04_04-48-09.log] [testng] 04:48:09,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35b17c06 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 795, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 70 minutes 57 seconds Finished: SUCCESS