Started by upstream project "BIOFORMATS-test-repo" build number 280
originally caused by:
Started by upstream project "Trigger" build number 300
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins13479575312917969515.sh
+ '[' hitachi = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44123_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:25:03,499 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:25:03,500 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 00:25:03,500 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:25:03,502 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:25:03,502 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:25:03,502 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:25:03,503 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:25:03,503 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:25:03,503 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:25:03,504 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:25:03,504 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:25:03,504 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:25:03,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:25:03,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:25:03,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:25:03,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:25:03,716 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:25:03,716 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:25:03,716 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:25:03,716 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:25:03,716 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 00:25:03,717 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 00:25:03,717 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 214 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-05 00:25:03,727] [main] java.version = 21
[testng] 00:25:03,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:25:03,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:03,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-05_00-25-03.log]
[testng] 00:25:03,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-12-05 00:25:03,775] [main] testng.directory = /data
[testng] [2024-12-05 00:25:03,775] [main] testng.configDirectory = /config
[testng] [2024-12-05 00:25:03,784] [main] testng.multiplier = 1.0
[testng] [2024-12-05 00:25:03,785] [main] testng.in-memory = false
[testng] [2024-12-05 00:25:03,785] [main] testng.allow-missing = false
[testng] [2024-12-05 00:25:03,785] [main] user.language = en
[testng] [2024-12-05 00:25:03,785] [main] user.country = ${user.country}
[testng] [2024-12-05 00:25:03,785] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-05 00:25:37,703] [main] ----------------------------------------
[testng] [2024-12-05 00:25:37,703] [main] Total files: 21
[testng] [2024-12-05 00:25:37,703] [main] Scan time: 33.918 s (1615 ms/file)
[testng] [2024-12-05 00:25:37,704] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-05 00:26:26,585] [pool-1-thread-1] Initializing /data/stefan/001_q09.txt:
[testng] 00:26:26,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:26:26,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:26,586 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-05_00-26-26.log]
[testng] 00:26:26,587 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8044dab - End of configuration.
[testng] [2024-12-05 00:26:31,347] [pool-1-thread-12] Initializing /data/stefan/001_q14.txt:
[testng] 00:26:31,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:26:31,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:31,349 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-05_00-26-31.log]
[testng] 00:26:31,350 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6317f7e6 - End of configuration.
[testng] [2024-12-05 00:26:34,046] [pool-1-thread-11] Initializing /data/stefan/001_q12.txt:
[testng] 00:26:34,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:26:34,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:34,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-05_00-26-34.log]
[testng] 00:26:34,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d557531 - End of configuration.
[testng] [2024-12-05 00:26:39,324] [pool-1-thread-10] Initializing /data/stefan/001_q11.txt:
[testng] 00:26:39,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:26:39,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:39,325 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-05_00-26-39.log]
[testng] 00:26:39,325 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65ca33dd - End of configuration.
[testng] [2024-12-05 00:26:44,049] [pool-1-thread-9] Initializing /data/stefan/001_q07.txt:
[testng] 00:26:44,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:26:44,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:44,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-05_00-26-44.log]
[testng] 00:26:44,051 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1321b722 - End of configuration.
[testng] [2024-12-05 00:26:48,249] [pool-1-thread-8] Initializing /data/stefan/001_q06.txt:
[testng] 00:26:48,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:26:48,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:48,250 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-05_00-26-48.log]
[testng] 00:26:48,250 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7abb614a - End of configuration.
[testng] [2024-12-05 00:26:50,050] [pool-1-thread-7] Initializing /data/stefan/001_q18.txt:
[testng] 00:26:50,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:26:50,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:50,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-05_00-26-50.log]
[testng] 00:26:50,051 |-INFO in ch.qos.logback.core.sift.SiftProcessor@613c0760 - End of configuration.
[testng] [2024-12-05 00:26:51,681] [pool-1-thread-6] Initializing /data/stefan/001_q04.txt:
[testng] 00:26:51,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:26:51,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:51,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-05_00-26-51.log]
[testng] 00:26:51,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b8b20c4 - End of configuration.
[testng] [2024-12-05 00:26:53,954] [pool-1-thread-5] Initializing /data/stefan/001_q05.txt:
[testng] 00:26:53,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:26:53,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:53,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-05_00-26-53.log]
[testng] 00:26:53,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21ef681f - End of configuration.
[testng] [2024-12-05 00:26:56,584] [pool-1-thread-4] Initializing /data/stefan/001_q03.txt:
[testng] 00:26:56,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:26:56,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:56,585 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-05_00-26-56.log]
[testng] 00:26:56,585 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ad5f290 - End of configuration.
[testng] [2024-12-05 00:26:57,734] [pool-1-thread-3] Initializing /data/stefan/001_q02.txt:
[testng] 00:26:57,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:26:57,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:57,735 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-05_00-26-57.log]
[testng] 00:26:57,736 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11901ffd - End of configuration.
[testng] [2024-12-05 00:26:59,131] [pool-1-thread-2] Initializing /data/stefan/001_q08.txt:
[testng] 00:26:59,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:26:59,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:59,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-05_00-26-59.log]
[testng] 00:26:59,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@478be03b - End of configuration.
[testng] [2024-12-05 00:27:46,287] [pool-1-thread-3] Initializing /data/stefan/001_q16.txt:
[testng] [2024-12-05 00:27:48,349] [pool-1-thread-6] Initializing /data/stefan/001_q13.txt:
[testng] [2024-12-05 00:27:50,997] [pool-1-thread-4] Initializing /data/stefan/001_q01.txt:
[testng] [2024-12-05 00:27:57,434] [pool-1-thread-5] Initializing /data/stefan/001_q10.txt:
[testng] [2024-12-05 00:28:04,732] [pool-1-thread-8] Initializing /data/stefan/001_q15.txt:
[testng] [2024-12-05 00:28:07,862] [pool-1-thread-12] Initializing /data/stefan/001_q17.txt:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 3 minutes 41 seconds
Finished: SUCCESS