Started by upstream project "BIOFORMATS-test-repo" build number 280
originally caused by:
Started by upstream project "Trigger" build number 300
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins4772923009672782938.sh
+ '[' targa = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44145_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:44:46,550 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:44:46,551 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 00:44:46,551 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:44:46,552 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:44:46,552 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:44:46,552 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:44:46,553 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:44:46,553 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:44:46,553 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:44:46,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:44:46,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:44:46,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:44:46,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:44:46,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:44:46,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:44:46,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:44:46,735 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:44:46,735 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:44:46,735 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:44:46,736 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:44:46,736 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 00:44:46,737 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 00:44:46,737 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 184 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-05 00:44:46,745] [main] java.version = 21
[testng] 00:44:46,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:44:46,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:44:46,788 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-05_00-44-46.log]
[testng] 00:44:46,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-12-05 00:44:46,791] [main] testng.directory = /data
[testng] [2024-12-05 00:44:46,792] [main] testng.configDirectory = /config
[testng] [2024-12-05 00:44:46,800] [main] testng.multiplier = 1.0
[testng] [2024-12-05 00:44:46,801] [main] testng.in-memory = false
[testng] [2024-12-05 00:44:46,801] [main] testng.allow-missing = false
[testng] [2024-12-05 00:44:46,801] [main] user.language = en
[testng] [2024-12-05 00:44:46,801] [main] user.country = ${user.country}
[testng] [2024-12-05 00:44:46,801] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-05 00:44:47,260] [main] ----------------------------------------
[testng] [2024-12-05 00:44:47,261] [main] Total files: 21
[testng] [2024-12-05 00:44:47,261] [main] Scan time: 0.459 s (21 ms/file)
[testng] [2024-12-05 00:44:47,261] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-05 00:44:53,591] [pool-1-thread-1] Initializing /data/samples/UBW8.TGA:
[testng] 00:44:53,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:44:53,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:44:53,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-05_00-44-53.log]
[testng] 00:44:53,593 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c7fb67c - End of configuration.
[testng] [2024-12-05 00:44:53,814] [pool-1-thread-12] Initializing /data/samples/XING_T16.TGA:
[testng] 00:44:53,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:44:53,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:44:53,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-05_00-44-53.log]
[testng] 00:44:53,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b7a5201 - End of configuration.
[testng] [2024-12-05 00:44:53,938] [pool-1-thread-11] Initializing /data/samples/FLAG_T32.TGA:
[testng] 00:44:53,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:44:53,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:44:53,940 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-05_00-44-53.log]
[testng] 00:44:53,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@745f46fe - End of configuration.
[testng] [2024-12-05 00:44:54,037] [pool-1-thread-10] Initializing /data/samples/CBW8.TGA:
[testng] 00:44:54,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:44:54,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:44:54,038 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-05_00-44-54.log]
[testng] 00:44:54,039 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d031cfc - End of configuration.
[testng] [2024-12-05 00:44:54,181] [pool-1-thread-9] Initializing /data/samples/FLAG_T16.TGA:
[testng] 00:44:54,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:44:54,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:44:54,182 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-05_00-44-54.log]
[testng] 00:44:54,182 |-INFO in ch.qos.logback.core.sift.SiftProcessor@233bbffd - End of configuration.
[testng] [2024-12-05 00:44:54,306] [pool-1-thread-8] Initializing /data/samples/FLAG_B32.TGA:
[testng] 00:44:54,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:44:54,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:44:54,307 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-05_00-44-54.log]
[testng] 00:44:54,308 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4088058 - End of configuration.
[testng] [2024-12-05 00:44:54,419] [pool-1-thread-7] Initializing /data/samples/XING_B24.TGA:
[testng] 00:44:54,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:44:54,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:44:54,420 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-05_00-44-54.log]
[testng] 00:44:54,420 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54efd25b - End of configuration.
[testng] [2024-12-05 00:44:54,535] [pool-1-thread-6] Initializing /data/samples/FLAG_B24.TGA:
[testng] 00:44:54,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:44:54,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:44:54,536 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-05_00-44-54.log]
[testng] 00:44:54,536 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e1ee04e - End of configuration.
[testng] [2024-12-05 00:44:54,662] [pool-1-thread-5] Initializing /data/samples/CTC24.TGA:
[testng] 00:44:54,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:44:54,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:44:54,663 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-05_00-44-54.log]
[testng] 00:44:54,664 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4afc8a22 - End of configuration.
[testng] [2024-12-05 00:44:54,812] [pool-1-thread-4] Initializing /data/samples/XING_B16.TGA:
[testng] 00:44:54,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:44:54,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:44:54,813 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-05_00-44-54.log]
[testng] 00:44:54,814 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4addbd91 - End of configuration.
[testng] [2024-12-05 00:44:54,917] [pool-1-thread-3] Initializing /data/samples/UTC32.TGA:
[testng] 00:44:54,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:44:54,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:44:54,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-05_00-44-54.log]
[testng] 00:44:54,918 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e3a70f1 - End of configuration.
[testng] [2024-12-05 00:44:54,997] [pool-1-thread-2] Initializing /data/samples/XING_T32.TGA:
[testng] 00:44:54,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:44:54,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:44:54,998 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-05_00-44-54.log]
[testng] 00:44:54,998 |-INFO in ch.qos.logback.core.sift.SiftProcessor@133cfe97 - End of configuration.
[testng] [2024-12-05 00:44:58,871] [pool-1-thread-10] Initializing /data/samples/UTC16.TGA:
[testng] [2024-12-05 00:44:58,969] [pool-1-thread-1] Initializing /data/samples/CTC16.TGA:
[testng] [2024-12-05 00:44:59,068] [pool-1-thread-8] Initializing /data/samples/UTC24.TGA:
[testng] [2024-12-05 00:44:59,185] [pool-1-thread-3] Initializing /data/samples/CCM8.TGA:
[testng] [2024-12-05 00:44:59,286] [pool-1-thread-11] Initializing /data/samples/MARBLES.TGA:
[testng] [2024-12-05 00:44:59,412] [pool-1-thread-9] Initializing /data/samples/XING_B32.TGA:
[testng] [2024-12-05 00:44:59,703] [pool-1-thread-5] Initializing /data/samples/FLAG_B16.TGA:
[testng] [2024-12-05 00:44:59,888] [pool-1-thread-6] Initializing /data/samples/UCM8.TGA:
[testng] [2024-12-05 00:45:00,321] [pool-1-thread-12] Initializing /data/samples/XING_T24.TGA:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 21 seconds
Finished: SUCCESS