Started by upstream project "BIOFORMATS-test-repo" build number 280
originally caused by:
Started by upstream project "Trigger" build number 300
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins14883891525181560303.sh
+ '[' bigtiff = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44150_merge_ci -v /uod/idr/repos/curated/bigtiff:/data -v /uod/idr-scratch/merge-ci/curated/bigtiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:52:16,693 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:52:16,694 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 00:52:16,694 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:52:16,695 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:52:16,695 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:52:16,696 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:52:16,696 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:52:16,696 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:52:16,696 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:52:16,697 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:52:16,697 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:52:16,697 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:52:16,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:52:16,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:52:16,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:52:16,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:52:16,893 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:52:16,893 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:52:16,893 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:52:16,894 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:52:16,894 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 00:52:16,895 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 00:52:16,895 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 199 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-05 00:52:16,904] [main] java.version = 21
[testng] 00:52:16,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:52:16,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:52:16,951 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-05_00-52-16.log]
[testng] 00:52:16,953 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-12-05 00:52:16,955] [main] testng.directory = /data
[testng] [2024-12-05 00:52:16,955] [main] testng.configDirectory = /config
[testng] [2024-12-05 00:52:16,964] [main] testng.multiplier = 1.0
[testng] [2024-12-05 00:52:16,965] [main] testng.in-memory = false
[testng] [2024-12-05 00:52:16,965] [main] testng.allow-missing = false
[testng] [2024-12-05 00:52:16,965] [main] user.language = en
[testng] [2024-12-05 00:52:16,965] [main] user.country = ${user.country}
[testng] [2024-12-05 00:52:16,965] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-05 00:52:19,262] [main] ----------------------------------------
[testng] [2024-12-05 00:52:19,262] [main] Total files: 14
[testng] [2024-12-05 00:52:19,262] [main] Scan time: 2.297 s (164 ms/file)
[testng] [2024-12-05 00:52:19,263] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-05 00:52:45,096] [pool-1-thread-1] Initializing /data/colin/7S59P8I1_F00000012.btf:
[testng] 00:52:45,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:52:45,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:52:45,098 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-05_00-52-45.log]
[testng] 00:52:45,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50a4d805 - End of configuration.
[testng] [2024-12-05 00:52:48,187] [pool-1-thread-12] Initializing /data/samples/BigTIFFLong.tif:
[testng] 00:52:48,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:52:48,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:52:48,188 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-05_00-52-48.log]
[testng] 00:52:48,188 |-INFO in ch.qos.logback.core.sift.SiftProcessor@520170f - End of configuration.
[testng] [2024-12-05 00:52:48,712] [pool-1-thread-11] Initializing /data/carlsen/Olympics8-lzw.tif:
[testng] 00:52:48,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:52:48,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:52:48,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-05_00-52-48.log]
[testng] 00:52:48,714 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fe4ccdb - End of configuration.
[testng] [2024-12-05 00:52:49,211] [pool-1-thread-10] Initializing /data/samples/BigTIFFLong8.tif:
[testng] 00:52:49,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:52:49,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:52:49,212 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-05_00-52-49.log]
[testng] 00:52:49,213 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58921827 - End of configuration.
[testng] [2024-12-05 00:52:49,985] [pool-1-thread-9] Initializing /data/carlsen/Olympics8-raw.tif:
[testng] 00:52:49,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:52:49,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:52:49,986 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-05_00-52-49.log]
[testng] 00:52:49,986 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e477ee5 - End of configuration.
[testng] [2024-12-05 00:52:50,697] [pool-1-thread-8] Initializing /data/samples/BigTIFFMotorolaLongStrips.tif:
[testng] 00:52:50,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:52:50,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:52:50,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-05_00-52-50.log]
[testng] 00:52:50,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@128e4448 - End of configuration.
[testng] [2024-12-05 00:52:51,813] [pool-1-thread-7] Initializing /data/samples/BigTIFFMotorola.tif:
[testng] 00:52:51,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:52:51,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:52:51,814 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-05_00-52-51.log]
[testng] 00:52:51,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f6dd29d - End of configuration.
[testng] [2024-12-05 00:52:52,827] [pool-1-thread-6] Initializing /data/samples/BigTIFFSubIFD4.tif:
[testng] 00:52:52,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:52:52,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:52:52,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-05_00-52-52.log]
[testng] 00:52:52,828 |-INFO in ch.qos.logback.core.sift.SiftProcessor@672d68b3 - End of configuration.
[testng] [2024-12-05 00:52:54,008] [pool-1-thread-5] Initializing /data/samples/BigTIFFLong8Tiles.tif:
[testng] 00:52:54,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:52:54,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:52:54,009 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-05_00-52-54.log]
[testng] 00:52:54,010 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62fc308d - End of configuration.
[testng] [2024-12-05 00:52:54,660] [pool-1-thread-4] Initializing /data/samples/Classic.tif:
[testng] 00:52:54,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:52:54,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:52:54,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-05_00-52-54.log]
[testng] 00:52:54,661 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5df9bae7 - End of configuration.
[testng] [2024-12-05 00:52:55,521] [pool-1-thread-3] Initializing /data/samples/BigTIFF.tif:
[testng] 00:52:55,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:52:55,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:52:55,522 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-05_00-52-55.log]
[testng] 00:52:55,522 |-INFO in ch.qos.logback.core.sift.SiftProcessor@379afb3a - End of configuration.
[testng] [2024-12-05 00:52:56,512] [pool-1-thread-2] Initializing /data/carlsen/Olympics8.tif:
[testng] 00:52:56,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:52:56,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:52:56,513 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-05_00-52-56.log]
[testng] 00:52:56,513 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c5b9c75 - End of configuration.
[testng] [2024-12-05 00:53:04,784] [pool-1-thread-8] Initializing /data/samples/BigTIFFSubIFD8.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 8 seconds
Finished: SUCCESS