Started by upstream project "BIOFORMATS-test-repo" build number 33
originally caused by:
Started by upstream project "Trigger" build number 37
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins14447930874690051606.sh
+ '[' hitachi = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_4416_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:20:52,725 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:20:52,727 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:20:52,727 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:20:52,728 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:20:52,729 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:20:52,729 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:20:52,730 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:20:52,730 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:20:52,731 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:20:52,732 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:20:52,732 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:20:52,732 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:20:53,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:20:53,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:20:53,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:20:53,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:20:53,050 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:20:53,051 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:20:53,051 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:20:53,051 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:20:53,051 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:20:53,052 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:20:53,053 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 322 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-14 01:20:53,064] [main] java.version = 17.0.2
[testng] 01:20:53,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:20:53,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:20:53,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-14_01-20-53.log]
[testng] 01:20:53,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-04-14 01:20:53,128] [main] testng.directory = /data
[testng] [2024-04-14 01:20:53,128] [main] testng.configDirectory = /config
[testng] [2024-04-14 01:20:53,139] [main] testng.multiplier = 1.0
[testng] [2024-04-14 01:20:53,140] [main] testng.in-memory = false
[testng] [2024-04-14 01:20:53,140] [main] testng.allow-missing = false
[testng] [2024-04-14 01:20:53,140] [main] user.language = en
[testng] [2024-04-14 01:20:53,140] [main] user.country = ${user.country}
[testng] [2024-04-14 01:20:53,140] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-04-14 01:20:54,459] [main] ----------------------------------------
[testng] [2024-04-14 01:20:54,459] [main] Total files: 21
[testng] [2024-04-14 01:20:54,459] [main] Scan time: 1.318 s (62 ms/file)
[testng] [2024-04-14 01:20:54,459] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-14 01:20:57,111] [pool-1-thread-1] Initializing /data/stefan/001_q05.txt:
[testng] 01:20:57,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:20:57,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:20:57,113 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-14_01-20-57.log]
[testng] 01:20:57,114 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bbbce4a - End of configuration.
[testng] [2024-04-14 01:20:57,156] [pool-1-thread-12] Initializing /data/stefan/001_q14.txt:
[testng] 01:20:57,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:20:57,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:20:57,157 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-14_01-20-57.log]
[testng] 01:20:57,158 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65ca33dd - End of configuration.
[testng] [2024-04-14 01:20:57,212] [pool-1-thread-11] Initializing /data/stefan/001_q03.txt:
[testng] 01:20:57,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:20:57,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:20:57,213 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-14_01-20-57.log]
[testng] 01:20:57,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6270edc3 - End of configuration.
[testng] [2024-04-14 01:20:57,244] [pool-1-thread-10] Initializing /data/stefan/001_q18.txt:
[testng] 01:20:57,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:20:57,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:20:57,245 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-14_01-20-57.log]
[testng] 01:20:57,246 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a2b92ab - End of configuration.
[testng] [2024-04-14 01:20:57,316] [pool-1-thread-9] Initializing /data/stefan/001_q11.txt:
[testng] 01:20:57,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:20:57,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:20:57,317 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-14_01-20-57.log]
[testng] 01:20:57,317 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ccd841e - End of configuration.
[testng] [2024-04-14 01:20:57,399] [pool-1-thread-8] Initializing /data/stefan/001_q10.txt:
[testng] 01:20:57,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:20:57,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:20:57,401 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-14_01-20-57.log]
[testng] 01:20:57,401 |-INFO in ch.qos.logback.core.sift.SiftProcessor@648c22f7 - End of configuration.
[testng] [2024-04-14 01:20:57,471] [pool-1-thread-7] Initializing /data/stefan/001_q04.txt:
[testng] 01:20:57,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:20:57,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:20:57,473 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-14_01-20-57.log]
[testng] 01:20:57,473 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3102bae0 - End of configuration.
[testng] [2024-04-14 01:20:57,501] [pool-1-thread-6] Initializing /data/stefan/001_q13.txt:
[testng] 01:20:57,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:20:57,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:20:57,502 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-14_01-20-57.log]
[testng] 01:20:57,503 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33ff6cfc - End of configuration.
[testng] [2024-04-14 01:20:57,551] [pool-1-thread-5] Initializing /data/stefan/001_q01.txt:
[testng] 01:20:57,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:20:57,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:20:57,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-14_01-20-57.log]
[testng] 01:20:57,552 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37d09324 - End of configuration.
[testng] [2024-04-14 01:20:57,581] [pool-1-thread-4] Initializing /data/stefan/001_q12.txt:
[testng] 01:20:57,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:20:57,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:20:57,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-14_01-20-57.log]
[testng] 01:20:57,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30d6583d - End of configuration.
[testng] [2024-04-14 01:20:57,674] [pool-1-thread-3] Initializing /data/stefan/001_q06.txt:
[testng] 01:20:57,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:20:57,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:20:57,675 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-14_01-20-57.log]
[testng] 01:20:57,676 |-INFO in ch.qos.logback.core.sift.SiftProcessor@479991ff - End of configuration.
[testng] [2024-04-14 01:20:57,706] [pool-1-thread-2] Initializing /data/stefan/001_q02.txt:
[testng] 01:20:57,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:20:57,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:20:57,707 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-14_01-20-57.log]
[testng] 01:20:57,707 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ae98d9f - End of configuration.
[testng] [2024-04-14 01:21:00,385] [pool-1-thread-12] Initializing /data/stefan/001_q07.txt:
[testng] [2024-04-14 01:21:00,453] [pool-1-thread-6] Initializing /data/stefan/001_q17.txt:
[testng] [2024-04-14 01:21:00,534] [pool-1-thread-7] Initializing /data/stefan/001_q16.txt:
[testng] [2024-04-14 01:21:00,573] [pool-1-thread-11] Initializing /data/stefan/001_q09.txt:
[testng] [2024-04-14 01:21:00,634] [pool-1-thread-5] Initializing /data/stefan/001_q08.txt:
[testng] [2024-04-14 01:21:00,686] [pool-1-thread-8] Initializing /data/stefan/001_q15.txt:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 13 seconds
Finished: SUCCESS