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Started by upstream project "BIOFORMATS-test-repo" build number 280 originally caused by: Started by upstream project "Trigger" build number 300 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins11856311408323033186.sh + '[' avi = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_44193_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:01:22,833 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:01:22,834 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 02:01:22,834 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:01:22,835 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:01:22,835 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:01:22,836 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:01:22,836 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:01:22,836 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:01:22,836 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:01:22,837 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:01:22,837 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:01:22,837 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:01:23,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:01:23,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:01:23,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:01:23,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:01:23,060 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:01:23,060 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:01:23,060 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:01:23,061 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:01:23,061 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 02:01:23,062 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 02:01:23,062 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 226 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-05 02:01:23,071] [main] java.version = 21 [testng] 02:01:23,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:01:23,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:23,115 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-05_02-01-23.log] [testng] 02:01:23,116 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-12-05 02:01:23,118] [main] testng.directory = /data [testng] [2024-12-05 02:01:23,118] [main] testng.configDirectory = /config [testng] [2024-12-05 02:01:23,126] [main] testng.multiplier = 1.0 [testng] [2024-12-05 02:01:23,127] [main] testng.in-memory = false [testng] [2024-12-05 02:01:23,127] [main] testng.allow-missing = false [testng] [2024-12-05 02:01:23,127] [main] user.language = en [testng] [2024-12-05 02:01:23,127] [main] user.country = ${user.country} [testng] [2024-12-05 02:01:23,127] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-05 02:01:29,711] [main] ---------------------------------------- [testng] [2024-12-05 02:01:29,712] [main] Total files: 40 [testng] [2024-12-05 02:01:29,712] [main] Scan time: 6.584 s (164 ms/file) [testng] [2024-12-05 02:01:29,712] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-05 02:02:35,731] [pool-1-thread-1] Initializing /data/william/worm.avi: [testng] 02:02:35,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:02:35,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:35,733 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-05_02-02-35.log] [testng] 02:02:35,733 |-INFO in ch.qos.logback.core.sift.SiftProcessor@669c7fff - End of configuration. [testng] [2024-12-05 02:02:36,022] [pool-1-thread-12] Initializing /data/kurt/40x_6um.avi: [testng] 02:02:36,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:02:36,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:36,023 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-05_02-02-36.log] [testng] 02:02:36,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19355278 - End of configuration. [testng] [2024-12-05 02:02:36,419] [pool-1-thread-11] Initializing /data/ascb/TIRF.avi: [testng] 02:02:36,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:02:36,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:36,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-05_02-02-36.log] [testng] 02:02:36,422 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f4ff5bb - End of configuration. [testng] [2024-12-05 02:02:37,045] [pool-1-thread-10] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] 02:02:37,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:02:37,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:37,046 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-05_02-02-37.log] [testng] 02:02:37,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d63f148 - End of configuration. [testng] [2024-12-05 02:02:37,567] [pool-1-thread-9] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] 02:02:37,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:02:37,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:37,568 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-05_02-02-37.log] [testng] 02:02:37,569 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19fa08ab - End of configuration. [testng] [2024-12-05 02:02:38,776] [pool-1-thread-8] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] 02:02:38,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:02:38,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:38,777 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-05_02-02-38.log] [testng] 02:02:38,777 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b7a53d7 - End of configuration. [testng] [2024-12-05 02:02:39,906] [pool-1-thread-7] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] 02:02:39,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:02:39,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:39,907 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-05_02-02-39.log] [testng] 02:02:39,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48cf9604 - End of configuration. [testng] [2024-12-05 02:02:40,269] [pool-1-thread-6] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] 02:02:40,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:02:40,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:40,270 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-05_02-02-40.log] [testng] 02:02:40,270 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d6aec0e - End of configuration. [testng] [2024-12-05 02:02:40,576] [pool-1-thread-5] Initializing /data/simon/24_bit_problem.avi: [testng] 02:02:40,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:02:40,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:40,577 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-05_02-02-40.log] [testng] 02:02:40,577 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53d3b9c0 - End of configuration. [testng] [2024-12-05 02:02:40,978] [pool-1-thread-4] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] 02:02:40,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:02:40,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:40,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-05_02-02-40.log] [testng] 02:02:40,980 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b4e7a8c - End of configuration. [testng] [2024-12-05 02:02:41,260] [pool-1-thread-3] Initializing /data/qa-11011/M-flow10001.avi: [testng] 02:02:41,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:02:41,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:41,261 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-05_02-02-41.log] [testng] 02:02:41,261 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d8050c2 - End of configuration. [testng] [2024-12-05 02:02:41,675] [pool-1-thread-2] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] 02:02:41,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:02:41,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:41,675 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-05_02-02-41.log] [testng] 02:02:41,676 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41b785fa - End of configuration. [testng] [2024-12-05 02:02:48,499] [pool-1-thread-6] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] [2024-12-05 02:02:48,859] [pool-1-thread-1] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] [2024-12-05 02:02:49,442] [pool-1-thread-10] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2024-12-05 02:02:50,319] [pool-1-thread-7] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] [2024-12-05 02:02:51,555] [pool-1-thread-8] Initializing /data/qa-7450/MVI_3610.AVI: [testng] [2024-12-05 02:02:51,895] [pool-1-thread-4] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-12-05 02:02:52,438] [pool-1-thread-11] Initializing /data/prairie/cornea dc and macs.AVI: [testng] [2024-12-05 02:02:52,737] [pool-1-thread-5] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [2024-12-05 02:02:53,099] [pool-1-thread-2] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] [2024-12-05 02:02:53,360] [pool-1-thread-12] Initializing /data/chris/APZ04_009.avi: [testng] [2024-12-05 02:02:55,189] [pool-1-thread-3] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] [2024-12-05 02:02:56,301] [pool-1-thread-9] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2024-12-05 02:03:01,023] [pool-1-thread-7] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [2024-12-05 02:03:01,658] [pool-1-thread-6] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] [2024-12-05 02:03:02,018] [pool-1-thread-10] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] [2024-12-05 02:03:02,378] [pool-1-thread-5] Initializing /data/kurt/63x_6um.avi: [testng] [2024-12-05 02:03:02,819] [pool-1-thread-2] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] [2024-12-05 02:03:03,137] [pool-1-thread-1] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2024-12-05 02:03:03,668] [pool-1-thread-11] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2024-12-05 02:03:03,970] [pool-1-thread-8] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] [2024-12-05 02:03:05,340] [pool-1-thread-3] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2024-12-05 02:03:05,800] [pool-1-thread-4] Initializing /data/kurt/40x_6um_2.avi: [testng] [2024-12-05 02:03:07,772] [pool-1-thread-9] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] [2024-12-05 02:03:10,962] [pool-1-thread-6] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] [2024-12-05 02:03:11,336] [pool-1-thread-1] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] [2024-12-05 02:03:11,761] [pool-1-thread-7] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 0 seconds Finished: SUCCESS