Started by upstream project "BIOFORMATS-test-repo" build number 280
originally caused by:
Started by upstream project "Trigger" build number 300
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins5179711806937494071.sh
+ '[' sxm = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44196_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:10:12,427 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:10:12,428 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 02:10:12,428 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:10:12,429 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:10:12,430 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:10:12,430 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:10:12,431 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:10:12,431 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:10:12,431 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:10:12,432 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:10:12,432 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:10:12,432 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:10:12,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:10:12,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:10:12,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:10:12,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:10:12,637 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:10:12,638 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:10:12,638 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:10:12,638 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:10:12,638 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 02:10:12,639 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 02:10:12,639 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 208 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-05 02:10:12,650] [main] java.version = 21
[testng] 02:10:12,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:10:12,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:10:12,696 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-05_02-10-12.log]
[testng] 02:10:12,697 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-12-05 02:10:12,699] [main] testng.directory = /data
[testng] [2024-12-05 02:10:12,699] [main] testng.configDirectory = /config
[testng] [2024-12-05 02:10:12,709] [main] testng.multiplier = 1.0
[testng] [2024-12-05 02:10:12,710] [main] testng.in-memory = false
[testng] [2024-12-05 02:10:12,710] [main] testng.allow-missing = false
[testng] [2024-12-05 02:10:12,710] [main] user.language = en
[testng] [2024-12-05 02:10:12,710] [main] user.country = ${user.country}
[testng] [2024-12-05 02:10:12,710] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-05 02:13:09,368] [main] ----------------------------------------
[testng] [2024-12-05 02:13:09,368] [main] Total files: 268
[testng] [2024-12-05 02:13:09,369] [main] Scan time: 176.658 s (659 ms/file)
[testng] [2024-12-05 02:13:09,369] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 160 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-05 02:20:23,467] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles:
[testng] 02:20:23,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:20:23,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:23,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-05_02-20-23.log]
[testng] 02:20:23,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b89081e - End of configuration.
[testng] [2024-12-05 02:20:26,265] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR:
[testng] 02:20:26,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:20:26,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:26,266 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-05_02-20-26.log]
[testng] 02:20:26,267 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66ffc860 - End of configuration.
[testng] [2024-12-05 02:20:26,799] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG:
[testng] 02:20:26,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:20:26,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:26,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-05_02-20-26.log]
[testng] 02:20:26,801 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6146994 - End of configuration.
[testng] [2024-12-05 02:20:27,434] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI:
[testng] 02:20:27,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:20:27,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:27,435 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-05_02-20-27.log]
[testng] 02:20:27,436 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1075138d - End of configuration.
[testng] [2024-12-05 02:20:28,117] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2:
[testng] 02:20:28,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:20:28,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:28,118 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-05_02-20-28.log]
[testng] 02:20:28,119 |-INFO in ch.qos.logback.core.sift.SiftProcessor@597c647e - End of configuration.
[testng] [2024-12-05 02:20:29,383] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR:
[testng] 02:20:29,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:20:29,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:29,384 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-05_02-20-29.log]
[testng] 02:20:29,384 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70ab3e1c - End of configuration.
[testng] [2024-12-05 02:20:29,909] [pool-1-thread-7] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk:
[testng] 02:20:29,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:20:29,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:29,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-05_02-20-29.log]
[testng] 02:20:29,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@666cff1f - End of configuration.
[testng] [2024-12-05 02:20:31,574] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3:
[testng] 02:20:31,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:20:31,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:31,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-05_02-20-31.log]
[testng] 02:20:31,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fdd534f - End of configuration.
[testng] [2024-12-05 02:20:33,065] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR:
[testng] 02:20:33,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:20:33,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:33,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-05_02-20-33.log]
[testng] 02:20:33,067 |-INFO in ch.qos.logback.core.sift.SiftProcessor@119ee5d6 - End of configuration.
[testng] [2024-12-05 02:20:33,737] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG:
[testng] 02:20:33,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:20:33,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:33,738 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-05_02-20-33.log]
[testng] 02:20:33,738 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53cf1994 - End of configuration.
[testng] [2024-12-05 02:20:35,001] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-31.IMG:
[testng] 02:20:35,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:20:35,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:35,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-05_02-20-35.log]
[testng] 02:20:35,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2358be25 - End of configuration.
[testng] [2024-12-05 02:20:35,518] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG:
[testng] 02:20:35,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:20:35,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:35,519 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-05_02-20-35.log]
[testng] 02:20:35,519 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d63c38a - End of configuration.
[testng] [2024-12-05 02:20:42,965] [pool-1-thread-10] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img:
[testng] [2024-12-05 02:20:44,627] [pool-1-thread-6] Initializing /data/steve/FITS/M13.fits:
[testng] [2024-12-05 02:20:45,147] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img:
[testng] [2024-12-05 02:20:47,476] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict:
[testng] [2024-12-05 02:20:48,176] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm:
[testng] [2024-12-05 02:20:48,814] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP:
[testng] [2024-12-05 02:20:49,334] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4:
[testng] [2024-12-05 02:20:50,208] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF:
[testng] [2024-12-05 02:20:53,822] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP:
[testng] [2024-12-05 02:20:54,447] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP:
[testng] [2024-12-05 02:20:55,902] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3:
[testng] [2024-12-05 02:20:56,178] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG:
[testng] [2024-12-05 02:20:57,356] [pool-1-thread-11] Initializing /data/steve/Targa/Test.TGA:
[testng] [2024-12-05 02:20:58,788] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF:
[testng] [2024-12-05 02:21:01,268] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt):
[testng] [2024-12-05 02:21:04,159] [pool-1-thread-12] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS:
[testng] [2024-12-05 02:21:04,821] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm:
[testng] [2024-12-05 02:21:05,901] [pool-1-thread-10] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts:
[testng] [2024-12-05 02:21:08,501] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif:
[testng] [2024-12-05 02:21:10,806] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2:
[testng] [2024-12-05 02:21:11,478] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm:
[testng] [2024-12-05 02:21:12,549] [pool-1-thread-1] Initializing /data/steve/FITS/M51.fits:
[testng] [2024-12-05 02:21:13,358] [pool-1-thread-11] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img:
[testng] [2024-12-05 02:21:15,926] [pool-1-thread-7] Initializing /data/steve/TIFF/HAFF SEM:
[testng] [2024-12-05 02:21:19,299] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2:
[testng] [2024-12-05 02:21:20,532] [pool-1-thread-2] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts:
[testng] [2024-12-05 02:21:20,755] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif:
[testng] [2024-12-05 02:21:23,716] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2:
[testng] [2024-12-05 02:21:24,464] [pool-1-thread-5] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF:
[testng] [2024-12-05 02:21:27,988] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test:
[testng] [2024-12-05 02:21:30,802] [pool-1-thread-8] Initializing /data/steve/TIFF/CONCRETE TIFF:
[testng] [2024-12-05 02:21:33,302] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP:
[testng] [2024-12-05 02:21:35,096] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif:
[testng] [2024-12-05 02:21:38,730] [pool-1-thread-10] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG:
[testng] [2024-12-05 02:21:40,397] [pool-1-thread-6] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd:
[testng] [2024-12-05 02:21:42,435] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif:
[testng] [2024-12-05 02:21:45,019] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm:
[testng] [2024-12-05 02:21:46,563] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP:
[testng] [2024-12-05 02:21:47,598] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif:
[testng] [2024-12-05 02:21:51,589] [pool-1-thread-5] Initializing /data/steve/SBIG/M81 H 250s Tr=5s:
[testng] [2024-12-05 02:21:54,337] [pool-1-thread-9] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif:
[testng] [2024-12-05 02:21:55,572] [pool-1-thread-7] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC:
[testng] [2024-12-05 02:21:56,522] [pool-1-thread-1] Initializing /data/steve/TIFF/8MAR03A.TIFF:
[testng] [2024-12-05 02:21:59,056] [pool-1-thread-6] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX:
[testng] [2024-12-05 02:21:59,413] [pool-1-thread-10] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF:
[testng] [2024-12-05 02:22:02,536] [pool-1-thread-4] Initializing /data/steve/UBM (Rosset)/SG2.PR3:
[testng] [2024-12-05 02:22:03,871] [pool-1-thread-2] Initializing /data/steve/SBIG/M82 H 100s Tr=10s:
[testng] [2024-12-05 02:22:08,636] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP:
[testng] [2024-12-05 02:22:09,989] [pool-1-thread-11] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM:
[testng] [2024-12-05 02:22:14,157] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict:
[testng] [2024-12-05 02:22:15,226] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict:
[testng] [2024-12-05 02:22:16,204] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee:
[testng] [2024-12-05 02:22:16,683] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG:
[testng] [2024-12-05 02:22:17,635] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG:
[testng] [2024-12-05 02:22:18,655] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR:
[testng] [2024-12-05 02:22:21,297] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr:
[testng] [2024-12-05 02:22:22,023] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack:
[testng] [2024-12-05 02:22:25,450] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3:
[testng] [2024-12-05 02:22:25,825] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict:
[testng] [2024-12-05 02:22:26,716] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5:
[testng] [2024-12-05 02:22:28,275] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2:
[testng] [2024-12-05 02:22:29,600] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm:
[testng] [2024-12-05 02:22:30,197] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS:
[testng] [2024-12-05 02:22:31,022] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi:
[testng] [2024-12-05 02:22:31,910] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm:
[testng] [2024-12-05 02:22:33,047] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT:
[testng] [2024-12-05 02:22:34,307] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF:
[testng] [2024-12-05 02:22:36,741] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2:
[testng] [2024-12-05 02:22:37,514] [pool-1-thread-12] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd:
[testng] [2024-12-05 02:22:37,968] [pool-1-thread-6] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd:
[testng] [2024-12-05 02:22:38,415] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF:
[testng] [2024-12-05 02:22:41,411] [pool-1-thread-1] Initializing /data/steve/SM-Camera/Orhan + IPES rig:
[testng] [2024-12-05 02:22:44,118] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm:
[testng] [2024-12-05 02:22:45,476] [pool-1-thread-9] Initializing /data/steve/VG SAM (Karen)/BGND.DTI:
[testng] [2024-12-05 02:22:46,058] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2:
[testng] [2024-12-05 02:22:46,896] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2:
[testng] [2024-12-05 02:22:47,881] [pool-1-thread-11] Initializing /data/steve/FITS/M104.fits:
[testng] [2024-12-05 02:22:48,040] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry):
[testng] [2024-12-05 02:22:48,763] [pool-1-thread-7] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS:
[testng] [2024-12-05 02:22:50,406] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/135-30.IMG:
[testng] [2024-12-05 02:22:50,887] [pool-1-thread-6] Initializing /data/steve/TIFF/Little owl TIFF:
[testng] [2024-12-05 02:22:53,071] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG:
[testng] [2024-12-05 02:22:54,541] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm:
[testng] [2024-12-05 02:22:55,333] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG:
[testng] [2024-12-05 02:22:56,788] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR:
[testng] [2024-12-05 02:22:57,891] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE:
[testng] [2024-12-05 02:22:58,979] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2:
[testng] [2024-12-05 02:22:59,780] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF:
[testng] [2024-12-05 02:23:01,645] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/135-32.IMG:
[testng] [2024-12-05 02:23:02,563] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2:
[testng] [2024-12-05 02:23:03,044] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2:
[testng] [2024-12-05 02:23:04,045] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/302.TIF:
[testng] [2024-12-05 02:23:06,780] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm:
[testng] [2024-12-05 02:23:07,944] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-33.IMG:
[testng] [2024-12-05 02:23:10,347] [pool-1-thread-10] Initializing /data/steve/TIFF/CD-ROM TIFF:
[testng] [2024-12-05 02:23:12,682] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3:
[testng] [2024-12-05 02:23:13,590] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP:
[testng] [2024-12-05 02:23:14,763] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm:
[testng] [2024-12-05 02:23:16,087] [pool-1-thread-7] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR:
[testng] [2024-12-05 02:23:16,895] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif:
[testng] [2024-12-05 02:23:18,988] [pool-1-thread-1] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV:
[testng] [2024-12-05 02:23:23,230] [pool-1-thread-2] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM:
[testng] [2024-12-05 02:23:26,817] [pool-1-thread-8] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf:
[testng] [2024-12-05 02:23:27,842] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS:
[testng] [2024-12-05 02:23:28,622] [pool-1-thread-3] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top:
[testng] [2024-12-05 02:23:29,245] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif:
[testng] [2024-12-05 02:23:33,442] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif:
[testng] [2024-12-05 02:23:35,596] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp:
[testng] [2024-12-05 02:23:37,115] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm:
[testng] [2024-12-05 02:23:37,965] [pool-1-thread-8] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF:
[testng] [2024-12-05 02:23:41,050] [pool-1-thread-3] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk:
[testng] [2024-12-05 02:23:41,891] [pool-1-thread-9] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG:
[testng] [2024-12-05 02:23:44,766] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF:
[testng] [2024-12-05 02:23:49,245] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm:
[testng] [2024-12-05 02:23:51,379] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif:
[testng] [2024-12-05 02:23:54,779] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test:
[testng] [2024-12-05 02:23:57,280] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm:
[testng] [2024-12-05 02:23:57,986] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG:
[testng] [2024-12-05 02:23:58,906] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm:
[testng] [2024-12-05 02:24:00,581] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm:
[testng] [2024-12-05 02:24:02,688] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2:
[testng] [2024-12-05 02:24:03,309] [pool-1-thread-6] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk:
[testng] [2024-12-05 02:24:04,321] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3:
[testng] [2024-12-05 02:24:06,268] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3:
[testng] [2024-12-05 02:24:07,072] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3:
[testng] [2024-12-05 02:24:07,730] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF:
[testng] [2024-12-05 02:24:11,269] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP:
[testng] [2024-12-05 02:24:12,817] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr:
[testng] [2024-12-05 02:24:16,033] [pool-1-thread-5] Initializing /data/steve/Philips (Markus G)/302.IMG:
[testng] [2024-12-05 02:24:16,649] [pool-1-thread-10] Initializing /data/steve/TIFF/Hough test TIFF:
[testng] [2024-12-05 02:24:20,335] [pool-1-thread-3] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts:
[testng] [2024-12-05 02:24:20,583] [pool-1-thread-2] Initializing /data/steve/TIFF/ta269 TIFF:
[testng] [2024-12-05 02:24:22,530] [pool-1-thread-12] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS:
[testng] [2024-12-05 02:24:24,560] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY:
[testng] [2024-12-05 02:24:24,949] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A:
[testng] [2024-12-05 02:24:25,328] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2:
[testng] [2024-12-05 02:24:26,823] [pool-1-thread-7] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top:
[testng] [2024-12-05 02:24:27,852] [pool-1-thread-9] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT:
[testng] [2024-12-05 02:24:30,028] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif:
[testng] [2024-12-05 02:24:33,098] [pool-1-thread-5] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC:
[testng] [2024-12-05 02:24:34,422] [pool-1-thread-11] Initializing /data/steve/Burleigh/Burleigh v2/Graphite:
[testng] [2024-12-05 02:24:37,261] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif:
[testng] [2024-12-05 02:24:40,999] [pool-1-thread-8] Initializing /data/steve/TIFF/ta123 stack TIFF:
[testng] [2024-12-05 02:24:45,801] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL:
[testng] [2024-12-05 02:24:47,101] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2:
[testng] [2024-12-05 02:24:47,755] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG:
[testng] [2024-12-05 02:24:48,800] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS:
[testng] [2024-12-05 02:24:49,372] [pool-1-thread-9] Initializing /data/steve/SBIG/M81 M 40s:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 8480, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 14 minutes 59 seconds
Finished: SUCCESS