Started by upstream project "BIOFORMATS-test-repo" build number 280
originally caused by:
Started by upstream project "Trigger" build number 300
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins17908319566358664522.sh
+ '[' ivision = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44262_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 05:18:19,431 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 05:18:19,432 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 05:18:19,432 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:18:19,433 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:18:19,433 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 05:18:19,434 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 05:18:19,434 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 05:18:19,434 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:18:19,434 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:18:19,435 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 05:18:19,435 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 05:18:19,435 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 05:18:19,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 05:18:19,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 05:18:19,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 05:18:19,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 05:18:19,621 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 05:18:19,621 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 05:18:19,622 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 05:18:19,622 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 05:18:19,622 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 05:18:19,623 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 05:18:19,623 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 189 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-05 05:18:19,632] [main] java.version = 21
[testng] 05:18:19,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 05:18:19,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:18:19,675 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-05_05-18-19.log]
[testng] 05:18:19,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-12-05 05:18:19,678] [main] testng.directory = /data
[testng] [2024-12-05 05:18:19,678] [main] testng.configDirectory = /config
[testng] [2024-12-05 05:18:19,687] [main] testng.multiplier = 1.0
[testng] [2024-12-05 05:18:19,688] [main] testng.in-memory = false
[testng] [2024-12-05 05:18:19,688] [main] testng.allow-missing = false
[testng] [2024-12-05 05:18:19,688] [main] user.language = en
[testng] [2024-12-05 05:18:19,688] [main] user.country = ${user.country}
[testng] [2024-12-05 05:18:19,688] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-05 05:18:23,450] [main] ----------------------------------------
[testng] [2024-12-05 05:18:23,450] [main] Total files: 17
[testng] [2024-12-05 05:18:23,451] [main] Scan time: 3.762 s (221 ms/file)
[testng] [2024-12-05 05:18:23,451] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 17 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-05 05:18:28,244] [pool-1-thread-1] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center:
[testng] 05:18:28,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 05:18:28,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:18:28,246 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-05_05-18-28.log]
[testng] 05:18:28,246 |-INFO in ch.qos.logback.core.sift.SiftProcessor@397a377a - End of configuration.
[testng] [2024-12-05 05:18:28,441] [pool-1-thread-12] Initializing /data/jcb/200810162/mutBA plus bio.ipm:
[testng] 05:18:28,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 05:18:28,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:18:28,442 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-05_05-18-28.log]
[testng] 05:18:28,443 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f5acf23 - End of configuration.
[testng] [2024-12-05 05:18:28,674] [pool-1-thread-11] Initializing /data/samples/16-bit 320x256x3.ipm:
[testng] 05:18:28,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 05:18:28,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:18:28,675 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-05_05-18-28.log]
[testng] 05:18:28,676 |-INFO in ch.qos.logback.core.sift.SiftProcessor@185ff927 - End of configuration.
[testng] [2024-12-05 05:18:28,962] [pool-1-thread-10] Initializing /data/nigel/CD48_75_24hrColor.ipm:
[testng] 05:18:28,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 05:18:28,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:18:28,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-05_05-18-28.log]
[testng] 05:18:28,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4266044c - End of configuration.
[testng] [2024-12-05 05:18:29,234] [pool-1-thread-9] Initializing /data/jcb/200810162/wt BA plus bio.ipm:
[testng] 05:18:29,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 05:18:29,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:18:29,235 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-05_05-18-29.log]
[testng] 05:18:29,235 |-INFO in ch.qos.logback.core.sift.SiftProcessor@422a2695 - End of configuration.
[testng] [2024-12-05 05:18:29,511] [pool-1-thread-8] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm:
[testng] 05:18:29,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 05:18:29,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:18:29,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-05_05-18-29.log]
[testng] 05:18:29,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75ede63e - End of configuration.
[testng] [2024-12-05 05:18:29,795] [pool-1-thread-7] Initializing /data/samples/08Bit 320x256x1.ipm:
[testng] 05:18:29,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 05:18:29,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:18:29,796 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-05_05-18-29.log]
[testng] 05:18:29,796 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3856a1ff - End of configuration.
[testng] [2024-12-05 05:18:30,063] [pool-1-thread-6] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm:
[testng] 05:18:30,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 05:18:30,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:18:30,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-05_05-18-30.log]
[testng] 05:18:30,064 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fad7e21 - End of configuration.
[testng] [2024-12-05 05:18:30,336] [pool-1-thread-5] Initializing /data/jcb/200810162/mut BA no bio.ipm:
[testng] 05:18:30,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 05:18:30,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:18:30,337 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-05_05-18-30.log]
[testng] 05:18:30,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8a65d62 - End of configuration.
[testng] [2024-12-05 05:18:30,542] [pool-1-thread-4] Initializing /data/samples/08Bit 320x256xthree.ipm:
[testng] 05:18:30,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 05:18:30,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:18:30,543 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-05_05-18-30.log]
[testng] 05:18:30,543 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b3bab6d - End of configuration.
[testng] [2024-12-05 05:18:30,727] [pool-1-thread-3] Initializing /data/christopher/Color48 Copy.ipm:
[testng] 05:18:30,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 05:18:30,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:18:30,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-05_05-18-30.log]
[testng] 05:18:30,729 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ff61e29 - End of configuration.
[testng] [2024-12-05 05:18:30,920] [pool-1-thread-2] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm:
[testng] 05:18:30,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 05:18:30,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:18:30,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-05_05-18-30.log]
[testng] 05:18:30,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59a1da2e - End of configuration.
[testng] [2024-12-05 05:18:35,378] [pool-1-thread-11] Initializing /data/samples/16bit 320x256x1.ipm:
[testng] [2024-12-05 05:18:35,557] [pool-1-thread-5] Initializing /data/samples/24bit 300x200x3.ipm:
[testng] [2024-12-05 05:18:35,752] [pool-1-thread-12] Initializing /data/samples/48bit 150x100x3.ipm:
[testng] [2024-12-05 05:18:36,001] [pool-1-thread-1] Initializing /data/jcb/200810162/wt ba no bio.ipm:
[testng] [2024-12-05 05:18:36,246] [pool-1-thread-9] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 901, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 22 seconds
Finished: SUCCESS