Started by upstream project "BIOFORMATS-test-repo" build number 280
originally caused by:
Started by upstream project "Trigger" build number 300
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins13610221098180786403.sh
+ '[' jpeg2000 = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44263_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 05:18:42,297 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 05:18:42,298 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 05:18:42,298 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:18:42,299 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:18:42,300 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 05:18:42,300 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 05:18:42,301 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 05:18:42,301 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:18:42,301 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:18:42,302 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 05:18:42,302 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 05:18:42,302 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 05:18:42,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 05:18:42,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 05:18:42,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 05:18:42,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 05:18:42,495 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 05:18:42,496 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 05:18:42,496 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 05:18:42,496 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 05:18:42,496 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 05:18:42,497 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 05:18:42,497 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-05 05:18:42,506] [main] java.version = 21
[testng] 05:18:42,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 05:18:42,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:18:42,551 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-05_05-18-42.log]
[testng] 05:18:42,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-12-05 05:18:42,554] [main] testng.directory = /data
[testng] [2024-12-05 05:18:42,554] [main] testng.configDirectory = /config
[testng] [2024-12-05 05:18:42,563] [main] testng.multiplier = 1.0
[testng] [2024-12-05 05:18:42,564] [main] testng.in-memory = false
[testng] [2024-12-05 05:18:42,564] [main] testng.allow-missing = false
[testng] [2024-12-05 05:18:42,564] [main] user.language = en
[testng] [2024-12-05 05:18:42,564] [main] user.country = ${user.country}
[testng] [2024-12-05 05:18:42,564] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-05 05:19:06,925] [main] ----------------------------------------
[testng] [2024-12-05 05:19:06,925] [main] Total files: 31
[testng] [2024-12-05 05:19:06,925] [main] Scan time: 24.361 s (785 ms/file)
[testng] [2024-12-05 05:19:06,926] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 30 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-05 05:19:35,830] [pool-1-thread-1] Initializing /data/kraig/head.jp2:
[testng] 05:19:35,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 05:19:35,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:19:35,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-05_05-19-35.log]
[testng] 05:19:35,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f05e70b - End of configuration.
[testng] [2024-12-05 05:19:36,519] [pool-1-thread-12] Initializing /data/misc/clown-rgb.jp2:
[testng] 05:19:36,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 05:19:36,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:19:36,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-05_05-19-36.log]
[testng] 05:19:36,521 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2359a202 - End of configuration.
[testng] [2024-12-05 05:19:37,132] [pool-1-thread-11] Initializing /data/david/multichannel-3d-MBF-type.jpx:
[testng] 05:19:37,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 05:19:37,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:19:37,134 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-05_05-19-37.log]
[testng] 05:19:37,135 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60a01aef - End of configuration.
[testng] [2024-12-05 05:19:38,246] [pool-1-thread-10] Initializing /data/venu/Multichannel 3a.jpg:
[testng] 05:19:38,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 05:19:38,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:19:38,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-05_05-19-38.log]
[testng] 05:19:38,248 |-INFO in ch.qos.logback.core.sift.SiftProcessor@194b2e78 - End of configuration.
[testng] [2024-12-05 05:19:38,474] [pool-1-thread-9] Initializing /data/mike/LCM-4-3-color-cleaned.tiff:
[testng] 05:19:38,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 05:19:38,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:19:38,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-05_05-19-38.log]
[testng] 05:19:38,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@474d1fdf - End of configuration.
[testng] [2024-12-05 05:19:40,019] [pool-1-thread-8] Initializing /data/vikram/Captured 3.jp2:
[testng] 05:19:40,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 05:19:40,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:19:40,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-05_05-19-40.log]
[testng] 05:19:40,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b3a2f01 - End of configuration.
[testng] [2024-12-05 05:19:40,999] [pool-1-thread-7] Initializing /data/misc/clown-rgb.jpc:
[testng] 05:19:40,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 05:19:40,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:19:41,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-05_05-19-41.log]
[testng] 05:19:41,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21bad1a1 - End of configuration.
[testng] [2024-12-05 05:19:41,890] [pool-1-thread-6] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2:
[testng] 05:19:41,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 05:19:41,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:19:41,892 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-05_05-19-41.log]
[testng] 05:19:41,893 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6052dbd0 - End of configuration.
[testng] [2024-12-05 05:19:42,747] [pool-1-thread-5] Initializing /data/big-images/2kx2k.jpf:
[testng] 05:19:42,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 05:19:42,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:19:42,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-05_05-19-42.log]
[testng] 05:19:42,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f06ac30 - End of configuration.
[testng] [2024-12-05 05:19:43,613] [pool-1-thread-4] Initializing /data/david/multichannel-2d test.jp2:
[testng] 05:19:43,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 05:19:43,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:19:43,614 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-05_05-19-43.log]
[testng] 05:19:43,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67628b32 - End of configuration.
[testng] [2024-12-05 05:19:44,484] [pool-1-thread-3] Initializing /data/mike/LCM-4-3-color-cleaned.jp2:
[testng] 05:19:44,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 05:19:44,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:19:44,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-05_05-19-44.log]
[testng] 05:19:44,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@de3f435 - End of configuration.
[testng] [2024-12-05 05:19:45,326] [pool-1-thread-2] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx:
[testng] 05:19:45,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 05:19:45,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:19:45,327 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-05_05-19-45.log]
[testng] 05:19:45,328 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fba5d2f - End of configuration.
[testng] [2024-12-05 05:19:51,300] [pool-1-thread-10] Initializing /data/vikram/Captured 5.jp2:
[testng] [2024-12-05 05:19:52,516] [pool-1-thread-7] Initializing /data/david/000000_000001.jpx:
[testng] [2024-12-05 05:19:53,244] [pool-1-thread-8] Initializing /data/angel/002_L050071_32_01_09_x2.jp2:
[testng] [2024-12-05 05:19:53,950] [pool-1-thread-12] Initializing /data/vikram/Captured 4.jp2:
[testng] [2024-12-05 05:19:54,613] [pool-1-thread-1] Initializing /data/misc/clown-rgb.jbig:
[testng] [2024-12-05 05:19:57,371] [pool-1-thread-9] Initializing /data/venu/Multichannel 3.jp2:
[testng] [2024-12-05 05:19:59,472] [pool-1-thread-6] Initializing /data/frans/flower.jp2:
[testng] [2024-12-05 05:20:00,657] [pool-1-thread-10] Initializing /data/aryeh/flour 12.jp2:
[testng] [2024-12-05 05:20:02,724] [pool-1-thread-5] Initializing /data/angel/052_L050071_56_x2hv.jp2:
[testng] [2024-12-05 05:20:03,733] [pool-1-thread-12] Initializing /data/big-images/4kx4k.jpf:
[testng] [2024-12-05 05:20:06,448] [pool-1-thread-1] Initializing /data/vikram/Captured 2.jp2:
[testng] [2024-12-05 05:20:08,346] [pool-1-thread-3] Initializing /data/big-images/8kx8k.jpf:
[testng] [2024-12-05 05:20:10,854] [pool-1-thread-7] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff:
[testng] [2024-12-05 05:20:14,044] [pool-1-thread-10] Initializing /data/vikram/Captured 1.jp2:
[testng] [2024-12-05 05:20:15,781] [pool-1-thread-8] Initializing /data/david/multichannel-2d test-non MBF-type.jp2:
[testng] [2024-12-05 05:20:17,346] [pool-1-thread-9] Initializing /data/david/C1R1_FOS.jp2:
[testng] [2024-12-05 05:20:18,094] [pool-1-thread-1] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2:
[testng] [2024-12-05 05:20:21,569] [pool-1-thread-10] Initializing /data/david/cy5-tph.jp2:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1590, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 6 minutes 50 seconds
Finished: SUCCESS