Started by upstream project "BIOFORMATS-test-repo" build number 281
originally caused by:
Started by upstream project "Trigger" build number 301
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins1083634945163229294.sh
+ '[' zip = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44295_merge_ci -v /uod/idr/repos/curated/zip:/data -v /uod/idr-scratch/merge-ci/curated/zip:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:28:40,779 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:28:40,781 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 00:28:40,781 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:28:40,782 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:28:40,782 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:28:40,782 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:28:40,782 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:28:40,782 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:28:40,783 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:28:40,783 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:28:40,783 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:28:40,783 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:28:41,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:28:41,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:28:41,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:28:41,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:28:41,104 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:28:41,104 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:28:41,104 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:28:41,105 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:28:41,105 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 00:28:41,106 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 00:28:41,107 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 324 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-06 00:28:41,118] [main] java.version = 1.8.0_342
[testng] 00:28:41,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:28:41,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:41,180 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_00-28-41.log]
[testng] 00:28:41,182 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-06 00:28:41,185] [main] testng.directory = /data
[testng] [2024-12-06 00:28:41,185] [main] testng.configDirectory = /config
[testng] [2024-12-06 00:28:41,199] [main] testng.multiplier = 1.0
[testng] [2024-12-06 00:28:41,199] [main] testng.in-memory = false
[testng] [2024-12-06 00:28:41,199] [main] testng.allow-missing = false
[testng] [2024-12-06 00:28:41,199] [main] user.language = en
[testng] [2024-12-06 00:28:41,199] [main] user.country = ${user.country}
[testng] [2024-12-06 00:28:41,200] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-06 00:28:41,857] [main] ----------------------------------------
[testng] [2024-12-06 00:28:41,857] [main] Total files: 22
[testng] [2024-12-06 00:28:41,857] [main] Scan time: 0.657 s (29 ms/file)
[testng] [2024-12-06 00:28:41,858] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 22 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-06 00:30:44,254] [pool-1-thread-1] Initializing /data/samples/sdub.zip:
[testng] 00:30:44,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:30:44,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:44,256 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-06_00-30-44.log]
[testng] 00:30:44,257 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64598946 - End of configuration.
[testng] [2024-12-06 00:30:45,891] [pool-1-thread-12] Initializing /data/imagej/mri-stack.zip:
[testng] 00:30:45,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:30:45,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:45,892 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-06_00-30-45.log]
[testng] 00:30:45,893 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48f984d5 - End of configuration.
[testng] [2024-12-06 00:30:51,900] [pool-1-thread-11] Initializing /data/imagej/hela-cells.zip:
[testng] 00:30:51,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:30:51,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:51,901 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-06_00-30-51.log]
[testng] 00:30:51,901 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7adc1fb8 - End of configuration.
[testng] [2024-12-06 00:30:55,588] [pool-1-thread-10] Initializing /data/imagej/watershed-animation.zip:
[testng] 00:30:55,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:30:55,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:55,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-06_00-30-55.log]
[testng] 00:30:55,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61e4c7f2 - End of configuration.
[testng] [2024-12-06 00:31:01,241] [pool-1-thread-9] Initializing /data/imagej/4D-Stack(256x256x20x10).zip:
[testng] 00:31:01,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:31:01,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:01,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-06_00-31-01.log]
[testng] 00:31:01,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1307a64d - End of configuration.
[testng] [2024-12-06 00:31:12,363] [pool-1-thread-8] Initializing /data/imagej/gel-electrophoresis.zip:
[testng] 00:31:12,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:31:12,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:12,364 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-06_00-31-12.log]
[testng] 00:31:12,364 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58aa4218 - End of configuration.
[testng] [2024-12-06 00:31:16,708] [pool-1-thread-7] Initializing /data/imagej/cheetah_256_8.tif.zip:
[testng] 00:31:16,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:31:16,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:16,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-06_00-31-16.log]
[testng] 00:31:16,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d46cb73 - End of configuration.
[testng] [2024-12-06 00:31:20,881] [pool-1-thread-6] Initializing /data/imagej/xrays.zip:
[testng] 00:31:20,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:31:20,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:20,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-06_00-31-20.log]
[testng] 00:31:20,883 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45d0492f - End of configuration.
[testng] [2024-12-06 00:31:22,771] [pool-1-thread-5] Initializing /data/imagej/confocal-stack.zip:
[testng] 00:31:22,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:31:22,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:22,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-06_00-31-22.log]
[testng] 00:31:22,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26159881 - End of configuration.
[testng] [2024-12-06 00:31:38,161] [pool-1-thread-4] Initializing /data/imagej/FluorescentCells.zip:
[testng] 00:31:38,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:31:38,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:38,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-06_00-31-38.log]
[testng] 00:31:38,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41178ab4 - End of configuration.
[testng] [2024-12-06 00:31:40,602] [pool-1-thread-3] Initializing /data/imagej/fat-cells.zip:
[testng] 00:31:40,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:31:40,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:40,603 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-06_00-31-40.log]
[testng] 00:31:40,603 |-INFO in ch.qos.logback.core.sift.SiftProcessor@447910ab - End of configuration.
[testng] [2024-12-06 00:31:47,630] [pool-1-thread-2] Initializing /data/imagej/Rat_Hippocampal_Neuron2.zip:
[testng] 00:31:47,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:31:47,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:47,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-06_00-31-47.log]
[testng] 00:31:47,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4679ba0f - End of configuration.
[testng] [2024-12-06 00:32:07,435] [pool-1-thread-1] Initializing /data/imagej/se3.zip:
[testng] [2024-12-06 00:32:24,205] [pool-1-thread-6] Initializing /data/imagej/RatBrain.zip:
[testng] [2024-12-06 00:32:29,786] [pool-1-thread-10] Initializing /data/imagej/blood-brain-barrier.zip:
[testng] [2024-12-06 00:32:41,047] [pool-1-thread-12] Initializing /data/imagej/Rat_Hippocampal_Neuron.zip:
[testng] [2024-12-06 00:32:47,001] [pool-1-thread-4] Initializing /data/imagej/scala-media.zip:
[testng] [2024-12-06 00:32:48,887] [pool-1-thread-7] Initializing /data/imagej/confocal-series.zip:
[testng] [2024-12-06 00:33:09,356] [pool-1-thread-6] Initializing /data/imagej/3D_Chromosome.zip:
[testng] [2024-12-06 00:33:11,388] [pool-1-thread-11] Initializing /data/imagej/flybrain.zip:
[testng] [2024-12-06 00:33:23,698] [pool-1-thread-2] Initializing /data/imagej/m51.zip:
[testng] [2024-12-06 00:33:26,303] [pool-1-thread-4] Initializing /data/samples/bat-cochlea-volume.zip:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1166, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 8 minutes 50 seconds
Finished: SUCCESS