Started by upstream project "BIOFORMATS-test-repo" build number 281
originally caused by:
Started by upstream project "Trigger" build number 301
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins11410211326765476062.sh
+ '[' fei = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44301_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:35:32,417 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:35:32,418 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 00:35:32,418 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:35:32,419 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:35:32,419 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:35:32,420 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:35:32,420 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:35:32,420 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:35:32,420 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:35:32,421 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:35:32,421 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:35:32,421 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:35:32,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:35:32,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:35:32,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:35:32,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:35:32,683 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:35:32,684 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:35:32,684 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:35:32,684 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:35:32,684 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 00:35:32,685 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 00:35:32,685 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 265 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-06 00:35:32,695] [main] java.version = 1.8.0_342
[testng] 00:35:32,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:35:32,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:32,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_00-35-32.log]
[testng] 00:35:32,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-06 00:35:32,751] [main] testng.directory = /data
[testng] [2024-12-06 00:35:32,751] [main] testng.configDirectory = /config
[testng] [2024-12-06 00:35:32,769] [main] testng.multiplier = 1.0
[testng] [2024-12-06 00:35:32,770] [main] testng.in-memory = false
[testng] [2024-12-06 00:35:32,770] [main] testng.allow-missing = false
[testng] [2024-12-06 00:35:32,770] [main] user.language = en
[testng] [2024-12-06 00:35:32,770] [main] user.country = ${user.country}
[testng] [2024-12-06 00:35:32,770] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-06 00:35:35,917] [main] ----------------------------------------
[testng] [2024-12-06 00:35:35,917] [main] Total files: 21
[testng] [2024-12-06 00:35:35,917] [main] Scan time: 3.147 s (149 ms/file)
[testng] [2024-12-06 00:35:35,917] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-06 00:35:40,969] [pool-1-thread-1] Initializing /data/antoine/Tile_001-002-000_0-000.tif:
[testng] 00:35:40,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:35:40,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:40,970 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-06_00-35-40.log]
[testng] 00:35:40,971 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5772068e - End of configuration.
[testng] [2024-12-06 00:35:41,151] [pool-1-thread-12] Initializing /data/venu/VENU_Seven.TIF:
[testng] 00:35:41,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:35:41,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:41,152 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-06_00-35-41.log]
[testng] 00:35:41,152 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4458edf6 - End of configuration.
[testng] [2024-12-06 00:35:41,322] [pool-1-thread-11] Initializing /data/venu/VENU_Four.TIF:
[testng] 00:35:41,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:35:41,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:41,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-06_00-35-41.log]
[testng] 00:35:41,324 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e9b7905 - End of configuration.
[testng] [2024-12-06 00:35:41,608] [pool-1-thread-10] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif:
[testng] 00:35:41,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:35:41,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:41,609 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-06_00-35-41.log]
[testng] 00:35:41,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50859b0 - End of configuration.
[testng] [2024-12-06 00:35:41,792] [pool-1-thread-9] Initializing /data/venu/VENU03.IMG:
[testng] 00:35:41,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:35:41,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:41,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-06_00-35-41.log]
[testng] 00:35:41,793 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f6dfae - End of configuration.
[testng] [2024-12-06 00:35:41,852] [pool-1-thread-8] Initializing /data/qa-11061/Tile_020-009-000_0.tif:
[testng] 00:35:41,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:35:41,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:41,852 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-06_00-35-41.log]
[testng] 00:35:41,853 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5585e0a3 - End of configuration.
[testng] [2024-12-06 00:35:42,039] [pool-1-thread-7] Initializing /data/venu/VENU01.IMG:
[testng] 00:35:42,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:35:42,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:42,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-06_00-35-42.log]
[testng] 00:35:42,040 |-INFO in ch.qos.logback.core.sift.SiftProcessor@339ea070 - End of configuration.
[testng] [2024-12-06 00:35:42,120] [pool-1-thread-6] Initializing /data/venu/VENU_Six.TIF:
[testng] 00:35:42,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:35:42,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:42,121 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-06_00-35-42.log]
[testng] 00:35:42,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a81e457 - End of configuration.
[testng] [2024-12-06 00:35:42,389] [pool-1-thread-5] Initializing /data/venu/VENU02.TIF:
[testng] 00:35:42,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:35:42,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:42,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-06_00-35-42.log]
[testng] 00:35:42,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7493511a - End of configuration.
[testng] [2024-12-06 00:35:42,574] [pool-1-thread-4] Initializing /data/steffen/Batman_008.tif:
[testng] 00:35:42,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:35:42,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:42,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-06_00-35-42.log]
[testng] 00:35:42,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19940339 - End of configuration.
[testng] [2024-12-06 00:35:42,833] [pool-1-thread-3] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif:
[testng] 00:35:42,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:35:42,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:42,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-06_00-35-42.log]
[testng] 00:35:42,834 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e2c9c48 - End of configuration.
[testng] [2024-12-06 00:35:43,071] [pool-1-thread-2] Initializing /data/venu/VENU_Five.TIF:
[testng] 00:35:43,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:35:43,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:43,072 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-06_00-35-43.log]
[testng] 00:35:43,073 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14c414e4 - End of configuration.
[testng] [2024-12-06 00:35:47,244] [pool-1-thread-7] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif:
[testng] [2024-12-06 00:35:47,604] [pool-1-thread-9] Initializing /data/venu/VENU.TIF:
[testng] [2024-12-06 00:35:50,635] [pool-1-thread-11] Initializing /data/venu/VENU_Eight.TIF:
[testng] [2024-12-06 00:35:50,905] [pool-1-thread-12] Initializing /data/venu/VENU01.TIF:
[testng] [2024-12-06 00:35:51,420] [pool-1-thread-4] Initializing /data/venu/VENU03.TIF:
[testng] [2024-12-06 00:35:51,674] [pool-1-thread-3] Initializing /data/venu/VENU02.IMG:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 27 seconds
Finished: SUCCESS