Started by upstream project "BIOFORMATS-test-repo" build number 281
originally caused by:
 Started by upstream project "Trigger" build number 301
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins11731180818304190871.sh
+ '[' mrc = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44333_merge_ci -v /uod/idr/repos/curated/mrc:/data -v /uod/idr-scratch/merge-ci/curated/mrc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 00:55:20,433 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 00:55:20,435 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
   [testng] 00:55:20,435 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:55:20,436 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:55:20,436 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 00:55:20,436 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 00:55:20,436 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 00:55:20,436 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:55:20,437 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:55:20,437 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 00:55:20,437 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 00:55:20,437 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 00:55:20,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 00:55:20,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 00:55:20,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 00:55:20,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 00:55:20,696 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 00:55:20,696 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 00:55:20,696 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 00:55:20,697 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 00:55:20,697 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
   [testng] 00:55:20,698 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
   [testng] 00:55:20,698 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 261 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-12-06 00:55:20,707] [main] java.version = 1.8.0_342
   [testng] 00:55:20,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 00:55:20,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:55:20,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_00-55-20.log]
   [testng] 00:55:20,757 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
   [testng] [2024-12-06 00:55:20,759] [main] testng.directory = /data
   [testng] [2024-12-06 00:55:20,759] [main] testng.configDirectory = /config
   [testng] [2024-12-06 00:55:20,771] [main] testng.multiplier = 1.0
   [testng] [2024-12-06 00:55:20,771] [main] testng.in-memory = false
   [testng] [2024-12-06 00:55:20,771] [main] testng.allow-missing = false
   [testng] [2024-12-06 00:55:20,771] [main] user.language = en
   [testng] [2024-12-06 00:55:20,771] [main] user.country = ${user.country}
   [testng] [2024-12-06 00:55:20,772] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-12-06 00:55:26,614] [main] ----------------------------------------
   [testng] [2024-12-06 00:55:26,614] [main] Total files: 20
   [testng] [2024-12-06 00:55:26,614] [main] Scan time: 5.842 s (292 ms/file)
   [testng] [2024-12-06 00:55:26,615] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 20 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-12-06 00:55:31,303] [pool-1-thread-1] Initializing /data/ascb/514_9903.mrc: 
   [testng] 00:55:31,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 00:55:31,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:55:31,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-06_00-55-31.log]
   [testng] 00:55:31,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5731881d - End of configuration.
   [testng] [2024-12-06 00:55:31,485] [pool-1-thread-12] Initializing /data/samples/golgi.mrc: 
   [testng] 00:55:31,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 00:55:31,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:55:31,486 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-06_00-55-31.log]
   [testng] 00:55:31,487 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51a85f83 - End of configuration.
   [testng] [2024-12-06 00:55:31,694] [pool-1-thread-11] Initializing /data/will/AMI-public-data/GroEL/05may19a_00013gr_00008sq_00002hl.mrc: 
   [testng] 00:55:31,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 00:55:31,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:55:31,696 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-06_00-55-31.log]
   [testng] 00:55:31,697 |-INFO in ch.qos.logback.core.sift.SiftProcessor@402f89ea - End of configuration.
   [testng] [2024-12-06 00:55:31,961] [pool-1-thread-10] Initializing /data/samples/agar-exttype/golgi-modified-AGAR.mrc: 
   [testng] 00:55:31,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 00:55:31,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:55:31,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-06_00-55-31.log]
   [testng] 00:55:31,962 |-INFO in ch.qos.logback.core.sift.SiftProcessor@453b05b6 - End of configuration.
   [testng] [2024-12-06 00:55:32,160] [pool-1-thread-9] Initializing /data/samples/1160.mrc: 
   [testng] 00:55:32,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 00:55:32,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:55:32,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-06_00-55-32.log]
   [testng] 00:55:32,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@415eba9e - End of configuration.
   [testng] [2024-12-06 00:55:32,331] [pool-1-thread-8] Initializing /data/will/CCDB-3587/wt_g21A2_bin3-ali.mrc: 
   [testng] 00:55:32,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 00:55:32,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:55:32,332 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-06_00-55-32.log]
   [testng] 00:55:32,333 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b13e13f - End of configuration.
   [testng] [2024-12-06 00:55:32,516] [pool-1-thread-7] Initializing /data/bioformats2raw-198/test_uint8.mrc: 
   [testng] 00:55:32,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 00:55:32,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:55:32,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-06_00-55-32.log]
   [testng] 00:55:32,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9673fea - End of configuration.
   [testng] [2024-12-06 00:55:32,942] [pool-1-thread-6] Initializing /data/public/EMDB/EMD-2225/EMD-2225.map: 
   [testng] 00:55:32,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 00:55:32,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:55:32,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-06_00-55-32.log]
   [testng] 00:55:32,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bb0f086 - End of configuration.
   [testng] [2024-12-06 00:55:33,238] [pool-1-thread-5] Initializing /data/jcb/thyl-apr23-4.rec: 
   [testng] 00:55:33,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 00:55:33,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:55:33,239 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-06_00-55-33.log]
   [testng] 00:55:33,240 |-INFO in ch.qos.logback.core.sift.SiftProcessor@460d039f - End of configuration.
   [testng] [2024-12-06 00:55:33,406] [pool-1-thread-4] Initializing /data/ascb/cfa1071.mrc: 
   [testng] 00:55:33,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 00:55:33,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:55:33,417 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-06_00-55-33.log]
   [testng] 00:55:33,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dd73262 - End of configuration.
   [testng] [2024-12-06 00:55:33,570] [pool-1-thread-3] Initializing /data/dan/one.mrc: 
   [testng] 00:55:33,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 00:55:33,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:55:33,571 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-06_00-55-33.log]
   [testng] 00:55:33,591 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50557eb8 - End of configuration.
   [testng] [2024-12-06 00:55:33,772] [pool-1-thread-2] Initializing /data/dan/two.mrc: 
   [testng] 00:55:33,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 00:55:33,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:55:33,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-06_00-55-33.log]
   [testng] 00:55:33,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5235277 - End of configuration.
   [testng] [2024-12-06 00:55:38,203] [pool-1-thread-7] Initializing /data/dan/three.mrc: 
   [testng] [2024-12-06 00:55:38,431] [pool-1-thread-6] Initializing /data/strand/Series1_A.mrc: 
   [testng] [2024-12-06 00:55:38,759] [pool-1-thread-11] Initializing /data/ticket-10073/wtjoin4.rec: 
   [testng] [2024-12-06 00:55:38,997] [pool-1-thread-8] Initializing /data/jcb/thylakoid5.rec: 
   [testng] [2024-12-06 00:55:39,268] [pool-1-thread-10] Initializing /data/ascb/c191ali.mrc: 
   [testng] [2024-12-06 00:55:39,530] [pool-1-thread-12] Initializing /data/ascb/c191.st: 
   [testng] [2024-12-06 00:55:39,690] [pool-1-thread-5] Initializing /data/gh-3297/old-header/1160-no-endian-marker.mrc: 
   [testng] [2024-12-06 00:55:40,158] [pool-1-thread-3] Initializing /data/will/AMI-public-data/GroEL/05may19a_00013gr_00008sq_00002hl_00002ef.mrc: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1060, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 27 seconds
Finished: SUCCESS