Started by upstream project "BIOFORMATS-test-repo" build number 281
originally caused by:
Started by upstream project "Trigger" build number 301
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins8605166472104950873.sh
+ '[' imaris = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44390_merge_ci -v /uod/idr/repos/curated/imaris:/data -v /uod/idr-scratch/merge-ci/curated/imaris:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 03:21:51,952 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 03:21:51,954 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 03:21:51,954 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:21:51,955 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:21:51,955 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 03:21:51,955 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 03:21:51,955 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 03:21:51,955 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:21:51,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:21:51,956 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 03:21:51,956 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 03:21:51,956 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 03:21:52,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 03:21:52,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 03:21:52,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 03:21:52,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 03:21:52,211 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 03:21:52,211 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 03:21:52,211 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 03:21:52,211 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 03:21:52,211 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 03:21:52,212 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 03:21:52,212 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 256 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-06 03:21:52,222] [main] java.version = 1.8.0_342
[testng] 03:21:52,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:21:52,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:21:52,269 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_03-21-52.log]
[testng] 03:21:52,271 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-06 03:21:52,274] [main] testng.directory = /data
[testng] [2024-12-06 03:21:52,274] [main] testng.configDirectory = /config
[testng] [2024-12-06 03:21:52,286] [main] testng.multiplier = 1.0
[testng] [2024-12-06 03:21:52,286] [main] testng.in-memory = false
[testng] [2024-12-06 03:21:52,286] [main] testng.allow-missing = false
[testng] [2024-12-06 03:21:52,286] [main] user.language = en
[testng] [2024-12-06 03:21:52,286] [main] user.country = ${user.country}
[testng] [2024-12-06 03:21:52,286] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-06 03:22:43,455] [main] ----------------------------------------
[testng] [2024-12-06 03:22:43,455] [main] Total files: 73
[testng] [2024-12-06 03:22:43,455] [main] Scan time: 51.168 s (700 ms/file)
[testng] [2024-12-06 03:22:43,455] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 63 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-06 03:23:44,025] [pool-1-thread-1] Initializing /data/public/davemason/Convallaria_3C_1T_confocal.ims:
[testng] 03:23:44,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 03:23:44,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:23:44,027 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-06_03-23-44.log]
[testng] 03:23:44,027 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b23c965 - End of configuration.
[testng] [2024-12-06 03:23:44,515] [pool-1-thread-12] Initializing /data/public/davemason/Convallaria_3C_3T_35Z_confocal_IMS3.ims:
[testng] 03:23:44,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 03:23:44,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:23:44,516 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-06_03-23-44.log]
[testng] 03:23:44,516 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e3ff06e - End of configuration.
[testng] [2024-12-06 03:23:44,992] [pool-1-thread-11] Initializing /data/generated/10-31_E_t0001.ims:
[testng] 03:23:44,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 03:23:44,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:23:44,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-06_03-23-44.log]
[testng] 03:23:44,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@398e8c0 - End of configuration.
[testng] [2024-12-06 03:23:45,192] [pool-1-thread-10] Initializing /data/qa-4898/o383_1_457_CS_r1.ims:
[testng] 03:23:45,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 03:23:45,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:23:45,193 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-06_03-23-45.log]
[testng] 03:23:45,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4234f67e - End of configuration.
[testng] [2024-12-06 03:23:45,510] [pool-1-thread-9] Initializing /data/gh-4193/24-5-9_RSV+AfumMscar+CFW_40x Stack_deconvolved.ims:
[testng] 03:23:45,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 03:23:45,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:23:45,511 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-06_03-23-45.log]
[testng] 03:23:45,511 |-INFO in ch.qos.logback.core.sift.SiftProcessor@715a2c9d - End of configuration.
[testng] [2024-12-06 03:23:45,783] [pool-1-thread-8] Initializing /data/generated/10-31_E_t0013.ims:
[testng] 03:23:45,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 03:23:45,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:23:45,784 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-06_03-23-45.log]
[testng] 03:23:45,784 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ad9d2ad - End of configuration.
[testng] [2024-12-06 03:23:45,960] [pool-1-thread-7] Initializing /data/generated/10-31_E_t0011.ims:
[testng] 03:23:45,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 03:23:45,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:23:45,961 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-06_03-23-45.log]
[testng] 03:23:45,962 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e884d90 - End of configuration.
[testng] [2024-12-06 03:23:46,195] [pool-1-thread-6] Initializing /data/generated/10-31_E_t0007.ims:
[testng] 03:23:46,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 03:23:46,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:23:46,196 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-06_03-23-46.log]
[testng] 03:23:46,197 |-INFO in ch.qos.logback.core.sift.SiftProcessor@368331c5 - End of configuration.
[testng] [2024-12-06 03:23:46,411] [pool-1-thread-5] Initializing /data/public/davemason/Convallaria_3C_3T_2x2grid_confocal_IMS3.ims:
[testng] 03:23:46,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 03:23:46,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:23:46,412 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-06_03-23-46.log]
[testng] 03:23:46,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5efce67f - End of configuration.
[testng] [2024-12-06 03:23:46,920] [pool-1-thread-4] Initializing /data/james/apoEcherry_IL10GFP_tfn647_1_R3D_D3D-Display Adjustment-Save-2011-7-5-1.ims:
[testng] 03:23:46,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 03:23:46,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:23:46,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-06_03-23-46.log]
[testng] 03:23:46,922 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cd83405 - End of configuration.
[testng] [2024-12-06 03:23:47,724] [pool-1-thread-3] Initializing /data/generated/10-31_E_t0014.ims:
[testng] 03:23:47,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 03:23:47,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:23:47,725 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-06_03-23-47.log]
[testng] 03:23:47,725 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ebb5a96 - End of configuration.
[testng] [2024-12-06 03:23:48,343] [pool-1-thread-2] Initializing /data/generated/10-31_E_t0004.ims:
[testng] 03:23:48,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 03:23:48,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:23:48,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-06_03-23-48.log]
[testng] 03:23:48,344 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c5efc13 - End of configuration.
BUILD SUCCESSFUL
Total time: 3 minutes 38 seconds
Finished: SUCCESS