Started by upstream project "BIOFORMATS-test-repo" build number 281
originally caused by:
Started by upstream project "Trigger" build number 301
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10
[BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins2276095501048129530.sh
+ '[' psd = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44406_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 04:09:35,459 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 04:09:35,460 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 04:09:35,460 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:09:35,461 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:09:35,461 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:09:35,461 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:09:35,462 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:09:35,462 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:09:35,462 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:09:35,462 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:09:35,463 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:09:35,463 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:09:35,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:09:35,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:09:35,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:09:35,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:09:35,703 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:09:35,703 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:09:35,703 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:09:35,704 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:09:35,704 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 04:09:35,704 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 04:09:35,705 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 242 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-06 04:09:35,714] [main] java.version = 1.8.0_342
[testng] 04:09:35,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:09:35,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:09:35,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_04-09-35.log]
[testng] 04:09:35,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-06 04:09:35,762] [main] testng.directory = /data
[testng] [2024-12-06 04:09:35,762] [main] testng.configDirectory = /config
[testng] [2024-12-06 04:09:35,774] [main] testng.multiplier = 1.0
[testng] [2024-12-06 04:09:35,775] [main] testng.in-memory = false
[testng] [2024-12-06 04:09:35,775] [main] testng.allow-missing = false
[testng] [2024-12-06 04:09:35,775] [main] user.language = en
[testng] [2024-12-06 04:09:35,775] [main] user.country = ${user.country}
[testng] [2024-12-06 04:09:35,775] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-06 04:09:36,930] [main] ----------------------------------------
[testng] [2024-12-06 04:09:36,930] [main] Total files: 18
[testng] [2024-12-06 04:09:36,931] [main] Scan time: 1.155 s (64 ms/file)
[testng] [2024-12-06 04:09:36,931] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-06 04:09:52,274] [pool-1-thread-1] Initializing /data/ascb/423.psd:
[testng] 04:09:52,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:09:52,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:09:52,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-06_04-09-52.log]
[testng] 04:09:52,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@516de83 - End of configuration.
[testng] [2024-12-06 04:09:53,222] [pool-1-thread-12] Initializing /data/jcb/Fig5A_sicont6h.tif:
[testng] 04:09:53,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:09:53,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:09:53,224 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-06_04-09-53.log]
[testng] 04:09:53,224 |-INFO in ch.qos.logback.core.sift.SiftProcessor@690374ac - End of configuration.
[testng] [2024-12-06 04:09:54,367] [pool-1-thread-11] Initializing /data/jcb/Fig5A_siHP16h.tif:
[testng] 04:09:54,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:09:54,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:09:54,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-06_04-09-54.log]
[testng] 04:09:54,369 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f9e7cf9 - End of configuration.
[testng] [2024-12-06 04:09:55,585] [pool-1-thread-10] Initializing /data/big-images/8kx8k.psd:
[testng] 04:09:55,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:09:55,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:09:55,586 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-06_04-09-55.log]
[testng] 04:09:55,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56f65fc7 - End of configuration.
[testng] [2024-12-06 04:09:56,228] [pool-1-thread-9] Initializing /data/qa-7632/23283078__NA_NA_27343.psd:
[testng] 04:09:56,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:09:56,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:09:56,229 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-06_04-09-56.log]
[testng] 04:09:56,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b239169 - End of configuration.
[testng] [2024-12-06 04:09:57,155] [pool-1-thread-8] Initializing /data/misc/glossy_buttons.psd:
[testng] 04:09:57,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:09:57,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:09:57,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-06_04-09-57.log]
[testng] 04:09:57,157 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fb335d1 - End of configuration.
[testng] [2024-12-06 04:09:57,767] [pool-1-thread-7] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd:
[testng] 04:09:57,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:09:57,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:09:57,769 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-06_04-09-57.log]
[testng] 04:09:57,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fa92f05 - End of configuration.
[testng] [2024-12-06 04:09:58,258] [pool-1-thread-6] Initializing /data/simon/colour_separated_image.psd:
[testng] 04:09:58,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:09:58,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:09:58,259 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-06_04-09-58.log]
[testng] 04:09:58,259 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67e296bc - End of configuration.
[testng] [2024-12-06 04:09:58,700] [pool-1-thread-5] Initializing /data/misc/smilie.psd:
[testng] 04:09:58,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:09:58,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:09:58,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-06_04-09-58.log]
[testng] 04:09:58,702 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1585cf6f - End of configuration.
[testng] [2024-12-06 04:09:59,277] [pool-1-thread-4] Initializing /data/misc/venus_composite_8bit.psd:
[testng] 04:09:59,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:09:59,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:09:59,278 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-06_04-09-59.log]
[testng] 04:09:59,278 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5367d4f2 - End of configuration.
[testng] [2024-12-06 04:10:00,234] [pool-1-thread-3] Initializing /data/ascb/607x.psd:
[testng] 04:10:00,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:10:00,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:10:00,235 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-06_04-10-00.log]
[testng] 04:10:00,235 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2796d2d0 - End of configuration.
[testng] [2024-12-06 04:10:00,697] [pool-1-thread-2] Initializing /data/ascb/thin&thick fill.2.psd:
[testng] 04:10:00,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:10:00,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:10:00,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-06_04-10-00.log]
[testng] 04:10:00,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d80dd3 - End of configuration.
[testng] [2024-12-06 04:10:07,145] [pool-1-thread-6] Initializing /data/jcb/Fig5A_sip1506h.tif:
[testng] [2024-12-06 04:10:08,354] [pool-1-thread-7] Initializing /data/cris/house.tif:
[testng] [2024-12-06 04:10:11,357] [pool-1-thread-5] Initializing /data/misc/venus_composite.psd:
[testng] [2024-12-06 04:10:12,410] [pool-1-thread-8] Initializing /data/misc/glossy_orbs.psd:
[testng] [2024-12-06 04:10:13,833] [pool-1-thread-12] Initializing /data/misc/vig_drawing_1.psd:
[testng] [2024-12-06 04:10:14,679] [pool-1-thread-11] Initializing /data/qa-4117/caspase gel-1.psd:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 55 seconds
Finished: SUCCESS