Started by upstream project "BIOFORMATS-test-repo" build number 281
originally caused by:
Started by upstream project "Trigger" build number 301
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10
[BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins3764625250314250373.sh
+ '[' biorad-gel = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44407_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 04:10:32,453 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 04:10:32,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 04:10:32,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:10:32,456 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:10:32,456 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:10:32,456 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:10:32,457 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:10:32,457 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:10:32,457 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:10:32,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:10:32,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:10:32,458 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:10:32,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:10:32,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:10:32,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:10:32,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:10:32,702 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:10:32,702 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:10:32,702 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:10:32,703 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:10:32,703 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 04:10:32,704 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 04:10:32,704 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 247 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-06 04:10:32,713] [main] java.version = 1.8.0_342
[testng] 04:10:32,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:10:32,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:10:32,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_04-10-32.log]
[testng] 04:10:32,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-06 04:10:32,762] [main] testng.directory = /data
[testng] [2024-12-06 04:10:32,762] [main] testng.configDirectory = /config
[testng] [2024-12-06 04:10:32,774] [main] testng.multiplier = 1.0
[testng] [2024-12-06 04:10:32,774] [main] testng.in-memory = false
[testng] [2024-12-06 04:10:32,774] [main] testng.allow-missing = false
[testng] [2024-12-06 04:10:32,774] [main] user.language = en
[testng] [2024-12-06 04:10:32,774] [main] user.country = ${user.country}
[testng] [2024-12-06 04:10:32,774] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-06 04:10:37,930] [main] ----------------------------------------
[testng] [2024-12-06 04:10:37,930] [main] Total files: 32
[testng] [2024-12-06 04:10:37,930] [main] Scan time: 5.156 s (161 ms/file)
[testng] [2024-12-06 04:10:37,930] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 32 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-06 04:11:14,622] [pool-1-thread-1] Initializing /data/geert/good example1.1sc.jpg:
[testng] 04:11:14,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:11:14,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:14,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-06_04-11-14.log]
[testng] 04:11:14,624 |-INFO in ch.qos.logback.core.sift.SiftProcessor@419d4f6b - End of configuration.
[testng] [2024-12-06 04:11:14,890] [pool-1-thread-12] Initializing /data/geert/good example1.1sc:
[testng] 04:11:14,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:11:14,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:14,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-06_04-11-14.log]
[testng] 04:11:14,891 |-INFO in ch.qos.logback.core.sift.SiftProcessor@547078df - End of configuration.
[testng] [2024-12-06 04:11:15,665] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 19min:
[testng] 04:11:15,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:11:15,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:15,666 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-06_04-11-15.log]
[testng] 04:11:15,667 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fe3ed37 - End of configuration.
[testng] [2024-12-06 04:11:16,309] [pool-1-thread-10] Initializing /data/geert/bad example1.jpg:
[testng] 04:11:16,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:11:16,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:16,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-06_04-11-16.log]
[testng] 04:11:16,310 |-INFO in ch.qos.logback.core.sift.SiftProcessor@708c2d1e - End of configuration.
[testng] [2024-12-06 04:11:16,528] [pool-1-thread-9] Initializing /data/qa-29469/bad2.1sc:
[testng] 04:11:16,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:11:16,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:16,529 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-06_04-11-16.log]
[testng] 04:11:16,530 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50355f40 - End of configuration.
[testng] [2024-12-06 04:11:17,147] [pool-1-thread-8] Initializing /data/david/Converted in Quantity One (Biorad).tiff:
[testng] 04:11:17,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:11:17,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:17,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-06_04-11-17.log]
[testng] 04:11:17,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39663161 - End of configuration.
[testng] [2024-12-06 04:11:19,057] [pool-1-thread-7] Initializing /data/sylvain/2009-10-26 14hr 57min:
[testng] 04:11:19,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:11:19,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:19,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-06_04-11-19.log]
[testng] 04:11:19,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4df71a96 - End of configuration.
[testng] [2024-12-06 04:11:19,607] [pool-1-thread-6] Initializing /data/keith/test2.1sc:
[testng] 04:11:19,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:11:19,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:19,608 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-06_04-11-19.log]
[testng] 04:11:19,608 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62df3c9c - End of configuration.
[testng] [2024-12-06 04:11:20,112] [pool-1-thread-5] Initializing /data/keith/test.1sc:
[testng] 04:11:20,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:11:20,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:20,113 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-06_04-11-20.log]
[testng] 04:11:20,113 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58977d27 - End of configuration.
[testng] [2024-12-06 04:11:20,677] [pool-1-thread-4] Initializing /data/sylvain/2009-10-23 12hr 19min.tif:
[testng] 04:11:20,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:11:20,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:20,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-06_04-11-20.log]
[testng] 04:11:20,678 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5decb9ba - End of configuration.
[testng] [2024-12-06 04:11:23,125] [pool-1-thread-3] Initializing /data/keith/PF020426MRSA v2.1sc:
[testng] 04:11:23,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:11:23,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:23,126 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-06_04-11-23.log]
[testng] 04:11:23,126 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7df533a7 - End of configuration.
[testng] [2024-12-06 04:11:23,884] [pool-1-thread-2] Initializing /data/keith/pg020410saur3.1sc:
[testng] 04:11:23,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:11:23,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:23,885 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-06_04-11-23.log]
[testng] 04:11:23,885 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66dbf6c - End of configuration.
[testng] [2024-12-06 04:11:30,053] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 59min.tif:
[testng] [2024-12-06 04:11:32,420] [pool-1-thread-5] Initializing /data/sylvain/2009-10-23 12hr 18min.tif:
[testng] [2024-12-06 04:11:34,923] [pool-1-thread-6] Initializing /data/qa-16880/c-src v7.1sc:
[testng] [2024-12-06 04:11:35,594] [pool-1-thread-3] Initializing /data/adrian/test_img.1sc:
[testng] [2024-12-06 04:11:36,691] [pool-1-thread-1] Initializing /data/david/Original Biorad Gel format file.1sc:
[testng] [2024-12-06 04:11:37,466] [pool-1-thread-9] Initializing /data/qa-29459/bad.1sc:
[testng] [2024-12-06 04:11:38,083] [pool-1-thread-12] Initializing /data/sylvain/2009-10-26 14hr 56min:
[testng] [2024-12-06 04:11:38,668] [pool-1-thread-7] Initializing /data/qa-29469/good.1sc:
[testng] [2024-12-06 04:11:39,223] [pool-1-thread-11] Initializing /data/sylvain/2009-10-26 14hr 59min:
[testng] [2024-12-06 04:11:39,851] [pool-1-thread-10] Initializing /data/sylvain/2009-10-26 14hr 57min.tif:
[testng] [2024-12-06 04:11:48,141] [pool-1-thread-1] Initializing /data/sylvain/2009-10-23 12hr 18min:
[testng] [2024-12-06 04:11:49,212] [pool-1-thread-6] Initializing /data/geert/bad example1.1sc.jpg:
[testng] [2024-12-06 04:11:49,594] [pool-1-thread-9] Initializing /data/samples/Criterion.1sc:
[testng] [2024-12-06 04:11:50,444] [pool-1-thread-7] Initializing /data/qa-29459/bad.jpg:
[testng] [2024-12-06 04:11:50,691] [pool-1-thread-11] Initializing /data/qa-29469/bad3.1sc:
[testng] [2024-12-06 04:11:51,349] [pool-1-thread-12] Initializing /data/geert/bad example1.1sc:
[testng] [2024-12-06 04:11:51,984] [pool-1-thread-3] Initializing /data/samples/imagesEight.1sc:
[testng] [2024-12-06 04:11:52,932] [pool-1-thread-8] Initializing /data/sylvain/2009-10-26 14hr 56min.tif:
[testng] [2024-12-06 04:11:55,266] [pool-1-thread-4] Initializing /data/david/Opened in imageJ.tiff:
[testng] [2024-12-06 04:11:58,969] [pool-1-thread-7] Initializing /data/keith/PF020328saur v3.1sc:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1696, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 42 seconds
Finished: SUCCESS