Started by upstream project "BIOFORMATS-test-repo" build number 281
originally caused by:
Started by upstream project "Trigger" build number 301
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins6988415131483726569.sh
+ '[' leica-tcs = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44416_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 04:31:09,366 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 04:31:09,367 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 04:31:09,367 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:31:09,368 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:31:09,368 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:31:09,368 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:31:09,369 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:31:09,369 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:31:09,369 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:31:09,369 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:31:09,370 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:31:09,370 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:31:09,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:31:09,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:31:09,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:31:09,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:31:09,616 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:31:09,616 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:31:09,616 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:31:09,616 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:31:09,616 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 04:31:09,617 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 04:31:09,617 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 248 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-06 04:31:09,626] [main] java.version = 1.8.0_342
[testng] 04:31:09,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:31:09,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:31:09,672 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_04-31-09.log]
[testng] 04:31:09,674 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-06 04:31:09,675] [main] testng.directory = /data
[testng] [2024-12-06 04:31:09,676] [main] testng.configDirectory = /config
[testng] [2024-12-06 04:31:09,687] [main] testng.multiplier = 1.0
[testng] [2024-12-06 04:31:09,688] [main] testng.in-memory = false
[testng] [2024-12-06 04:31:09,688] [main] testng.allow-missing = false
[testng] [2024-12-06 04:31:09,688] [main] user.language = en
[testng] [2024-12-06 04:31:09,688] [main] user.country = ${user.country}
[testng] [2024-12-06 04:31:09,688] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-06 04:31:26,537] [main] ----------------------------------------
[testng] [2024-12-06 04:31:26,537] [main] Total files: 944
[testng] [2024-12-06 04:31:26,537] [main] Scan time: 16.849 s (17 ms/file)
[testng] [2024-12-06 04:31:26,537] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-06 04:33:54,417] [pool-1-thread-1] Initializing /data/stjude/AntoDay1dblGRP.tif:
[testng] 04:33:54,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:33:54,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:33:54,418 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-06_04-33-54.log]
[testng] 04:33:54,419 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6624d4b2 - End of configuration.
[testng] [2024-12-06 04:33:55,822] [pool-1-thread-12] Initializing /data/brian/Series002_z01.tif:
[testng] 04:33:55,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:33:55,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:33:55,824 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-06_04-33-55.log]
[testng] 04:33:55,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3aac5c36 - End of configuration.
[testng] [2024-12-06 04:33:57,964] [pool-1-thread-11] Initializing /data/martin/Series028_z00_ch00.tif:
[testng] 04:33:57,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:33:57,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:33:57,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-06_04-33-57.log]
[testng] 04:33:57,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d3d5021 - End of configuration.
[testng] [2024-12-06 04:34:00,302] [pool-1-thread-10] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif:
[testng] 04:34:00,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:34:00,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:00,303 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-06_04-34-00.log]
[testng] 04:34:00,303 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4659da0f - End of configuration.
[testng] [2024-12-06 04:34:02,373] [pool-1-thread-9] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF:
[testng] 04:34:02,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:34:02,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:02,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-06_04-34-02.log]
[testng] 04:34:02,374 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75b6bc89 - End of configuration.
[testng] [2024-12-06 04:34:04,351] [pool-1-thread-8] Initializing /data/stjude/Antoday1dblmysglGRP.tif:
[testng] 04:34:04,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:34:04,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:04,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-06_04-34-04.log]
[testng] 04:34:04,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c34ea9e - End of configuration.
[testng] [2024-12-06 04:34:06,603] [pool-1-thread-7] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif:
[testng] 04:34:06,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:34:06,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:06,604 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-06_04-34-06.log]
[testng] 04:34:06,604 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55d14953 - End of configuration.
[testng] [2024-12-06 04:34:10,510] [pool-1-thread-6] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif:
[testng] 04:34:10,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:34:10,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:10,511 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-06_04-34-10.log]
[testng] 04:34:10,511 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20641946 - End of configuration.
[testng] [2024-12-06 04:35:30,798] [pool-1-thread-5] Initializing /data/stjude/Antoday1dblcatsglGRP.tif:
[testng] 04:35:30,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:35:30,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:35:30,799 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-06_04-35-30.log]
[testng] 04:35:30,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ff045b5 - End of configuration.
[testng] [2024-12-06 04:35:32,447] [pool-1-thread-4] Initializing /data/brian/Series002_z00_ch00.tif:
[testng] 04:35:32,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:35:32,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:35:32,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-06_04-35-32.log]
[testng] 04:35:32,448 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a54ccd9 - End of configuration.
[testng] [2024-12-06 04:35:34,305] [pool-1-thread-3] Initializing /data/stjude/AntoDay4dblmyGRP.tif:
[testng] 04:35:34,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:35:34,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:35:34,306 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-06_04-35-34.log]
[testng] 04:35:34,306 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68948eb0 - End of configuration.
[testng] [2024-12-06 04:35:36,320] [pool-1-thread-2] Initializing /data/stjude/AntoDayzerocy3GRP.tif:
[testng] 04:35:36,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:35:36,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:35:36,320 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-06_04-35-36.log]
[testng] 04:35:36,321 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76a512ea - End of configuration.
[testng] [2024-12-06 04:35:51,776] [pool-1-thread-9] Initializing /data/primate/Leica_Image.tif:
[testng] [2024-12-06 04:35:57,870] [pool-1-thread-12] Initializing /data/stjude/AntoDayzerocy3OVP.tif:
[testng] [2024-12-06 04:36:01,776] [pool-1-thread-7] Initializing /data/stjude/AntoDay4dblmy2GRP.tif:
[testng] 06:41:00,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 06:41:00,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:41:00,294 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_06-41-00.log]
[testng] 06:41:00,295 |-INFO in ch.qos.logback.core.sift.SiftProcessor@181d8899 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 795, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 129 minutes 53 seconds
Finished: SUCCESS