Started by upstream project "BIOFORMATS-test-repo" build number 33
originally caused by:
Started by upstream project "Trigger" build number 37
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins1201165271438930702.sh
+ '[' bigtiff = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_4443_merge_ci -v /uod/idr/repos/curated/bigtiff:/data -v /uod/idr-scratch/merge-ci/curated/bigtiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:27:23,100 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:27:23,101 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:27:23,101 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:27:23,102 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:27:23,103 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:27:23,103 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:27:23,103 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:27:23,103 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:27:23,104 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:27:23,104 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:27:23,105 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:27:23,105 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:27:23,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:27:23,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:27:23,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:27:23,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:27:23,298 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:27:23,298 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:27:23,298 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:27:23,298 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:27:23,299 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:27:23,299 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:27:23,299 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-14 01:27:23,308] [main] java.version = 17.0.2
[testng] 01:27:23,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:27:23,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:23,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-14_01-27-23.log]
[testng] 01:27:23,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-04-14 01:27:23,356] [main] testng.directory = /data
[testng] [2024-04-14 01:27:23,356] [main] testng.configDirectory = /config
[testng] [2024-04-14 01:27:23,365] [main] testng.multiplier = 1.0
[testng] [2024-04-14 01:27:23,366] [main] testng.in-memory = false
[testng] [2024-04-14 01:27:23,366] [main] testng.allow-missing = false
[testng] [2024-04-14 01:27:23,366] [main] user.language = en
[testng] [2024-04-14 01:27:23,366] [main] user.country = ${user.country}
[testng] [2024-04-14 01:27:23,366] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-04-14 01:27:23,850] [main] ----------------------------------------
[testng] [2024-04-14 01:27:23,850] [main] Total files: 14
[testng] [2024-04-14 01:27:23,850] [main] Scan time: 0.483 s (34 ms/file)
[testng] [2024-04-14 01:27:23,850] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-14 01:27:32,814] [pool-1-thread-1] Initializing /data/samples/BigTIFFLong.tif:
[testng] 01:27:32,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:27:32,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:32,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-14_01-27-32.log]
[testng] 01:27:32,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a7a6637 - End of configuration.
[testng] [2024-04-14 01:27:32,881] [pool-1-thread-12] Initializing /data/colin/7S59P8I1_F00000012.btf:
[testng] 01:27:32,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:27:32,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:32,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-14_01-27-32.log]
[testng] 01:27:32,882 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7568218d - End of configuration.
[testng] [2024-04-14 01:27:35,651] [pool-1-thread-11] Initializing /data/samples/BigTIFFSubIFD4.tif:
[testng] 01:27:35,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:27:35,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:35,653 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-14_01-27-35.log]
[testng] 01:27:35,653 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70ff39d1 - End of configuration.
[testng] [2024-04-14 01:27:35,672] [pool-1-thread-10] Initializing /data/samples/BigTIFFLong8Tiles.tif:
[testng] 01:27:35,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:27:35,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:35,674 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-14_01-27-35.log]
[testng] 01:27:35,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ef89e71 - End of configuration.
[testng] [2024-04-14 01:27:35,698] [pool-1-thread-9] Initializing /data/carlsen/Olympics8-raw.tif:
[testng] 01:27:35,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:27:35,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:35,699 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-14_01-27-35.log]
[testng] 01:27:35,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@411b8130 - End of configuration.
[testng] [2024-04-14 01:27:35,736] [pool-1-thread-8] Initializing /data/samples/BigTIFFMotorola.tif:
[testng] 01:27:35,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:27:35,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:35,737 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-14_01-27-35.log]
[testng] 01:27:35,737 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42793270 - End of configuration.
[testng] [2024-04-14 01:27:35,760] [pool-1-thread-7] Initializing /data/carlsen/Olympics8-lzw.tif:
[testng] 01:27:35,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:27:35,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:35,761 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-14_01-27-35.log]
[testng] 01:27:35,761 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a7a40ff - End of configuration.
[testng] [2024-04-14 01:27:35,794] [pool-1-thread-6] Initializing /data/samples/BigTIFFSubIFD8.tif:
[testng] 01:27:35,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:27:35,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:35,795 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-14_01-27-35.log]
[testng] 01:27:35,796 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e60e8ec - End of configuration.
[testng] [2024-04-14 01:27:35,823] [pool-1-thread-5] Initializing /data/samples/BigTIFF.tif:
[testng] 01:27:35,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:27:35,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:35,824 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-14_01-27-35.log]
[testng] 01:27:35,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e77f532 - End of configuration.
[testng] [2024-04-14 01:27:35,845] [pool-1-thread-4] Initializing /data/samples/BigTIFFLong8.tif:
[testng] 01:27:35,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:27:35,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:35,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-14_01-27-35.log]
[testng] 01:27:35,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fa03425 - End of configuration.
[testng] [2024-04-14 01:27:35,868] [pool-1-thread-3] Initializing /data/samples/Classic.tif:
[testng] 01:27:35,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:27:35,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:35,869 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-14_01-27-35.log]
[testng] 01:27:35,870 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24b82369 - End of configuration.
[testng] [2024-04-14 01:27:35,889] [pool-1-thread-2] Initializing /data/carlsen/Olympics8.tif:
[testng] 01:27:35,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:27:35,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:35,890 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-14_01-27-35.log]
[testng] 01:27:35,890 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38f94840 - End of configuration.
[testng] [2024-04-14 01:27:37,579] [pool-1-thread-6] Initializing /data/samples/BigTIFFMotorolaLongStrips.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 34 seconds
Finished: SUCCESS