Started by upstream project "BIOFORMATS-test-repo" build number 281
originally caused by:
Started by upstream project "Trigger" build number 301
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins11307580067177308113.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44431_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 05:28:41,777 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 05:28:41,778 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 05:28:41,778 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:28:41,779 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:28:41,779 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 05:28:41,779 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 05:28:41,780 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 05:28:41,780 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:28:41,780 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:28:41,780 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 05:28:41,781 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 05:28:41,781 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 05:28:42,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 05:28:42,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 05:28:42,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 05:28:42,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 05:28:42,042 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 05:28:42,042 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 05:28:42,042 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 05:28:42,043 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 05:28:42,043 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 05:28:42,043 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 05:28:42,043 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 263 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-06 05:28:42,053] [main] java.version = 1.8.0_342
[testng] 05:28:42,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 05:28:42,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:28:42,101 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_05-28-42.log]
[testng] 05:28:42,102 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-06 05:28:42,104] [main] testng.directory = /data
[testng] [2024-12-06 05:28:42,104] [main] testng.configDirectory = /config
[testng] [2024-12-06 05:28:42,116] [main] testng.multiplier = 1.0
[testng] [2024-12-06 05:28:42,116] [main] testng.in-memory = false
[testng] [2024-12-06 05:28:42,116] [main] testng.allow-missing = false
[testng] [2024-12-06 05:28:42,116] [main] user.language = en
[testng] [2024-12-06 05:28:42,116] [main] user.country = ${user.country}
[testng] [2024-12-06 05:28:42,117] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-06 05:28:47,919] [main] ----------------------------------------
[testng] [2024-12-06 05:28:47,919] [main] Total files: 22
[testng] [2024-12-06 05:28:47,920] [main] Scan time: 5.802 s (263 ms/file)
[testng] [2024-12-06 05:28:47,920] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-06 05:29:19,712] [pool-1-thread-1] Initializing /data/converted/NESb_C2_TP7.seq:
[testng] 05:29:19,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 05:29:19,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:29:19,714 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-06_05-29-19.log]
[testng] 05:29:19,714 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4763fb74 - End of configuration.
[testng] [2024-12-06 05:29:21,081] [pool-1-thread-12] Initializing /data/converted/clown8c.tif:
[testng] 05:29:21,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 05:29:21,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:29:21,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-06_05-29-21.log]
[testng] 05:29:21,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4775fa85 - End of configuration.
[testng] [2024-12-06 05:29:22,357] [pool-1-thread-11] Initializing /data/samples/TISSUE.TIF:
[testng] 05:29:22,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 05:29:22,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:29:22,358 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-06_05-29-22.log]
[testng] 05:29:22,359 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27f5a4b0 - End of configuration.
[testng] [2024-12-06 05:29:23,624] [pool-1-thread-10] Initializing /data/converted/dub01.seq:
[testng] 05:29:23,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 05:29:23,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:29:23,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-06_05-29-23.log]
[testng] 05:29:23,626 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59941479 - End of configuration.
[testng] [2024-12-06 05:29:24,196] [pool-1-thread-9] Initializing /data/xiuwen/head2.seq:
[testng] 05:29:24,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 05:29:24,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:29:24,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-06_05-29-24.log]
[testng] 05:29:24,197 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7173b87e - End of configuration.
[testng] [2024-12-06 05:29:25,303] [pool-1-thread-8] Initializing /data/samples/PROBE.TIF:
[testng] 05:29:25,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 05:29:25,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:29:25,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-06_05-29-25.log]
[testng] 05:29:25,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68a14e0b - End of configuration.
[testng] [2024-12-06 05:29:26,006] [pool-1-thread-7] Initializing /data/converted/clown.ipw:
[testng] 05:29:26,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 05:29:26,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:29:26,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-06_05-29-26.log]
[testng] 05:29:26,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@473475b4 - End of configuration.
[testng] [2024-12-06 05:29:26,513] [pool-1-thread-6] Initializing /data/samples/HEART.SEQ:
[testng] 05:29:26,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 05:29:26,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:29:26,514 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-06_05-29-26.log]
[testng] 05:29:26,515 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d2e8299 - End of configuration.
[testng] [2024-12-06 05:29:27,212] [pool-1-thread-5] Initializing /data/converted/mitosis-test.seq:
[testng] 05:29:27,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 05:29:27,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:29:27,213 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-06_05-29-27.log]
[testng] 05:29:27,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a440482 - End of configuration.
[testng] [2024-12-06 05:29:27,880] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.ipw:
[testng] 05:29:27,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 05:29:27,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:29:27,881 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-06_05-29-27.log]
[testng] 05:29:27,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@560b7bb0 - End of configuration.
[testng] [2024-12-06 05:29:28,525] [pool-1-thread-3] Initializing /data/converted/mitosis-test.tif:
[testng] 05:29:28,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 05:29:28,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:29:28,526 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-06_05-29-28.log]
[testng] 05:29:28,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f423351 - End of configuration.
[testng] [2024-12-06 05:29:30,562] [pool-1-thread-2] Initializing /data/converted/clown.tif:
[testng] 05:29:30,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 05:29:30,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:29:30,563 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-06_05-29-30.log]
[testng] 05:29:30,563 |-INFO in ch.qos.logback.core.sift.SiftProcessor@516adaa1 - End of configuration.
[testng] [2024-12-06 05:29:38,954] [pool-1-thread-7] Initializing /data/converted/clown.seq:
[testng] [2024-12-06 05:29:40,088] [pool-1-thread-2] Initializing /data/converted/clown8c.seq:
[testng] [2024-12-06 05:29:40,876] [pool-1-thread-5] Initializing /data/converted/dub01.ipw:
[testng] [2024-12-06 05:29:42,485] [pool-1-thread-8] Initializing /data/alex/AFAset0003.ips:
[testng] [2024-12-06 05:29:43,488] [pool-1-thread-6] Initializing /data/converted/dub01.pic:
[testng] [2024-12-06 05:29:45,105] [pool-1-thread-10] Initializing /data/converted/clown8c.ipw:
[testng] [2024-12-06 05:29:45,634] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.tiff:
[testng] [2024-12-06 05:29:47,990] [pool-1-thread-1] Initializing /data/converted/mitosis-test.ipw:
[testng] [2024-12-06 05:29:49,372] [pool-1-thread-9] Initializing /data/samples/FLDUAL.TIF:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 5 minutes 3 seconds
Finished: SUCCESS