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Started by upstream project "BIOFORMATS-test-repo" build number 282 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins2289321868953047444.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_44438_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 10:10:55,785 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 10:10:55,787 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 10:10:55,787 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:10:55,788 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:10:55,788 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 10:10:55,788 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 10:10:55,788 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 10:10:55,788 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:10:55,789 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:10:55,789 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 10:10:55,789 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 10:10:55,789 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 10:10:56,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 10:10:56,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 10:10:56,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 10:10:56,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 10:10:56,149 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 10:10:56,149 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 10:10:56,149 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 10:10:56,150 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 10:10:56,150 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 10:10:56,150 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 10:10:56,151 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 362 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-06 10:10:56,161] [main] java.version = 1.8.0_342 [testng] 10:10:56,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 10:10:56,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:10:56,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_10-10-56.log] [testng] 10:10:56,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-06 10:10:56,258] [main] testng.directory = /data [testng] [2024-12-06 10:10:56,258] [main] testng.configDirectory = /config [testng] [2024-12-06 10:10:56,292] [main] testng.multiplier = 1.0 [testng] [2024-12-06 10:10:56,292] [main] testng.in-memory = false [testng] [2024-12-06 10:10:56,293] [main] testng.allow-missing = false [testng] [2024-12-06 10:10:56,293] [main] user.language = en [testng] [2024-12-06 10:10:56,293] [main] user.country = ${user.country} [testng] [2024-12-06 10:10:56,293] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-06 10:10:57,427] [main] ---------------------------------------- [testng] [2024-12-06 10:10:57,427] [main] Total files: 36 [testng] [2024-12-06 10:10:57,427] [main] Scan time: 1.134 s (31 ms/file) [testng] [2024-12-06 10:10:57,427] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-06 10:10:58,927] [pool-1-thread-1] Initializing /data/generated/mri-stack12.pcx: [testng] 10:10:58,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 10:10:58,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:10:58,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-06_10-10-58.log] [testng] 10:10:58,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d2629ff - End of configuration. [testng] [2024-12-06 10:10:58,972] [pool-1-thread-12] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] 10:10:58,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 10:10:58,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:10:58,973 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-06_10-10-58.log] [testng] 10:10:58,973 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7788ed18 - End of configuration. [testng] [2024-12-06 10:10:58,984] [pool-1-thread-11] Initializing /data/generated/mri-stack16.pcx: [testng] 10:10:58,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 10:10:58,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:10:58,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-06_10-10-58.log] [testng] 10:10:58,985 |-INFO in ch.qos.logback.core.sift.SiftProcessor@462bf57d - End of configuration. [testng] [2024-12-06 10:10:58,993] [pool-1-thread-10] Initializing /data/generated/mri-stack4.pcx: [testng] 10:10:58,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 10:10:58,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:10:58,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-06_10-10-58.log] [testng] 10:10:58,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c94ba29 - End of configuration. [testng] [2024-12-06 10:10:59,002] [pool-1-thread-9] Initializing /data/generated/mri-stack6.pcx: [testng] 10:10:59,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 10:10:59,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:10:59,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-06_10-10-59.log] [testng] 10:10:59,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3eaacac2 - End of configuration. [testng] [2024-12-06 10:10:59,011] [pool-1-thread-8] Initializing /data/generated/mri-stack10.pcx: [testng] 10:10:59,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 10:10:59,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:10:59,011 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-06_10-10-59.log] [testng] 10:10:59,012 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a770581 - End of configuration. [testng] [2024-12-06 10:10:59,019] [pool-1-thread-7] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] 10:10:59,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 10:10:59,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:10:59,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-06_10-10-59.log] [testng] 10:10:59,020 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75e20353 - End of configuration. [testng] [2024-12-06 10:10:59,042] [pool-1-thread-6] Initializing /data/generated/mri-stack3.pcx: [testng] 10:10:59,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 10:10:59,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:10:59,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-06_10-10-59.log] [testng] 10:10:59,045 |-INFO in ch.qos.logback.core.sift.SiftProcessor@410472f2 - End of configuration. [testng] [2024-12-06 10:10:59,056] [pool-1-thread-5] Initializing /data/generated/mri-stack14.pcx: [testng] 10:10:59,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 10:10:59,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:10:59,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-06_10-10-59.log] [testng] 10:10:59,057 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76352484 - End of configuration. [testng] [2024-12-06 10:10:59,069] [pool-1-thread-4] Initializing /data/generated/mri-stack19.pcx: [testng] 10:10:59,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 10:10:59,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:10:59,070 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-06_10-10-59.log] [testng] 10:10:59,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36c16470 - End of configuration. [testng] [2024-12-06 10:10:59,078] [pool-1-thread-3] Initializing /data/generated/mri-stack17.pcx: [testng] 10:10:59,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 10:10:59,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:10:59,079 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-06_10-10-59.log] [testng] 10:10:59,079 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3166f7d4 - End of configuration. [testng] [2024-12-06 10:10:59,089] [pool-1-thread-2] Initializing /data/generated/mri-stack7.pcx: [testng] 10:10:59,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 10:10:59,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:10:59,090 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-06_10-10-59.log] [testng] 10:10:59,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2da0b9ac - End of configuration. [testng] [2024-12-06 10:11:01,549] [pool-1-thread-11] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-12-06 10:11:01,557] [pool-1-thread-9] Initializing /data/generated/mri-stack2.pcx: [testng] [2024-12-06 10:11:01,564] [pool-1-thread-8] Initializing /data/generated/mri-stack18.pcx: [testng] [2024-12-06 10:11:01,571] [pool-1-thread-3] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] [2024-12-06 10:11:01,580] [pool-1-thread-2] Initializing /data/generated/mri-stack15.pcx: [testng] [2024-12-06 10:11:01,586] [pool-1-thread-1] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2024-12-06 10:11:01,595] [pool-1-thread-10] Initializing /data/generated/mri-stack0.pcx: [testng] [2024-12-06 10:11:01,601] [pool-1-thread-5] Initializing /data/generated/mri-stack23.pcx: [testng] [2024-12-06 10:11:01,607] [pool-1-thread-4] Initializing /data/generated/mri-stack20.pcx: [testng] [2024-12-06 10:11:01,614] [pool-1-thread-6] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-12-06 10:11:01,623] [pool-1-thread-7] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-12-06 10:11:01,630] [pool-1-thread-12] Initializing /data/generated/mri-stack26.pcx: [testng] [2024-12-06 10:11:02,327] [pool-1-thread-10] Initializing /data/generated/mri-stack21.pcx: [testng] [2024-12-06 10:11:02,341] [pool-1-thread-2] Initializing /data/generated/mri-stack8.pcx: [testng] [2024-12-06 10:11:02,353] [pool-1-thread-9] Initializing /data/generated/mri-stack24.pcx: [testng] [2024-12-06 10:11:02,361] [pool-1-thread-12] Initializing /data/generated/mri-stack25.pcx: [testng] [2024-12-06 10:11:02,400] [pool-1-thread-5] Initializing /data/generated/mri-stack5.pcx: [testng] [2024-12-06 10:11:02,529] [pool-1-thread-8] Initializing /data/generated/mri-stack13.pcx: [testng] [2024-12-06 10:11:02,554] [pool-1-thread-7] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-12-06 10:11:02,580] [pool-1-thread-11] Initializing /data/generated/mri-stack11.pcx: [testng] [2024-12-06 10:11:02,622] [pool-1-thread-4] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2024-12-06 10:11:02,943] [pool-1-thread-12] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2024-12-06 10:11:02,969] [pool-1-thread-2] Initializing /data/generated/mri-stack1.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 18 seconds Finished: SUCCESS