Started by upstream project "BIOFORMATS-test-repo" build number 282
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins6454858277875199923.sh
+ '[' hitachi = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44453_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 10:11:34,118 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 10:11:34,121 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 10:11:34,121 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 10:11:34,123 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 10:11:34,123 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 10:11:34,123 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 10:11:34,124 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 10:11:34,124 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 10:11:34,124 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 10:11:34,125 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 10:11:34,125 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 10:11:34,125 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 10:11:34,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 10:11:34,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 10:11:34,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 10:11:34,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 10:11:34,408 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 10:11:34,408 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 10:11:34,409 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 10:11:34,409 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 10:11:34,409 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 10:11:34,410 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 10:11:34,410 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 286 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-06 10:11:34,420] [main] java.version = 1.8.0_342
[testng] 10:11:34,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 10:11:34,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:11:34,468 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_10-11-34.log]
[testng] 10:11:34,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-06 10:11:34,472] [main] testng.directory = /data
[testng] [2024-12-06 10:11:34,472] [main] testng.configDirectory = /config
[testng] [2024-12-06 10:11:34,484] [main] testng.multiplier = 1.0
[testng] [2024-12-06 10:11:34,484] [main] testng.in-memory = false
[testng] [2024-12-06 10:11:34,484] [main] testng.allow-missing = false
[testng] [2024-12-06 10:11:34,485] [main] user.language = en
[testng] [2024-12-06 10:11:34,485] [main] user.country = ${user.country}
[testng] [2024-12-06 10:11:34,485] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-06 10:11:45,803] [main] ----------------------------------------
[testng] [2024-12-06 10:11:45,804] [main] Total files: 21
[testng] [2024-12-06 10:11:45,804] [main] Scan time: 11.318 s (538 ms/file)
[testng] [2024-12-06 10:11:45,804] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-06 10:12:04,282] [pool-1-thread-1] Initializing /data/stefan/001_q04.txt:
[testng] 10:12:04,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 10:12:04,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:12:04,284 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-06_10-12-04.log]
[testng] 10:12:04,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9adcc83 - End of configuration.
[testng] [2024-12-06 10:12:04,924] [pool-1-thread-12] Initializing /data/stefan/001_q11.txt:
[testng] 10:12:04,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 10:12:04,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:12:04,925 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-06_10-12-04.log]
[testng] 10:12:04,925 |-INFO in ch.qos.logback.core.sift.SiftProcessor@82eb154 - End of configuration.
[testng] [2024-12-06 10:12:05,827] [pool-1-thread-11] Initializing /data/stefan/001_q03.txt:
[testng] 10:12:05,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 10:12:05,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:12:05,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-06_10-12-05.log]
[testng] 10:12:05,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b36b943 - End of configuration.
[testng] [2024-12-06 10:12:06,321] [pool-1-thread-10] Initializing /data/stefan/001_q07.txt:
[testng] 10:12:06,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 10:12:06,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:12:06,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-06_10-12-06.log]
[testng] 10:12:06,322 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c18d7e6 - End of configuration.
[testng] [2024-12-06 10:12:08,970] [pool-1-thread-9] Initializing /data/stefan/001_q13.txt:
[testng] 10:12:08,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 10:12:08,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:12:08,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-06_10-12-08.log]
[testng] 10:12:08,971 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42abb97b - End of configuration.
[testng] [2024-12-06 10:12:10,218] [pool-1-thread-8] Initializing /data/stefan/001_q18.txt:
[testng] 10:12:10,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 10:12:10,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:12:10,219 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-06_10-12-10.log]
[testng] 10:12:10,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@405dec63 - End of configuration.
[testng] [2024-12-06 10:12:11,828] [pool-1-thread-7] Initializing /data/stefan/001_q01.txt:
[testng] 10:12:11,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 10:12:11,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:12:11,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-06_10-12-11.log]
[testng] 10:12:11,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@458a7717 - End of configuration.
[testng] [2024-12-06 10:12:13,294] [pool-1-thread-6] Initializing /data/stefan/001_q15.txt:
[testng] 10:12:13,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 10:12:13,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:12:13,295 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-06_10-12-13.log]
[testng] 10:12:13,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78e886b0 - End of configuration.
[testng] [2024-12-06 10:12:14,748] [pool-1-thread-5] Initializing /data/stefan/001_q10.txt:
[testng] 10:12:14,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 10:12:14,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:12:14,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-06_10-12-14.log]
[testng] 10:12:14,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38c39606 - End of configuration.
[testng] [2024-12-06 10:12:17,732] [pool-1-thread-4] Initializing /data/stefan/001_q05.txt:
[testng] 10:12:17,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 10:12:17,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:12:17,733 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-06_10-12-17.log]
[testng] 10:12:17,733 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fdf92a7 - End of configuration.
[testng] [2024-12-06 10:12:19,282] [pool-1-thread-3] Initializing /data/stefan/001_q09.txt:
[testng] 10:12:19,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 10:12:19,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:12:19,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-06_10-12-19.log]
[testng] 10:12:19,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b7abd66 - End of configuration.
[testng] [2024-12-06 10:12:21,916] [pool-1-thread-2] Initializing /data/stefan/001_q06.txt:
[testng] 10:12:21,916 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 10:12:21,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:12:21,917 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-06_10-12-21.log]
[testng] 10:12:21,917 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12711b38 - End of configuration.
[testng] [2024-12-06 10:12:42,122] [pool-1-thread-1] Initializing /data/stefan/001_q14.txt:
[testng] [2024-12-06 10:12:43,812] [pool-1-thread-11] Initializing /data/stefan/001_q16.txt:
[testng] [2024-12-06 10:12:45,235] [pool-1-thread-7] Initializing /data/stefan/001_q08.txt:
[testng] [2024-12-06 10:12:47,431] [pool-1-thread-2] Initializing /data/stefan/001_q12.txt:
[testng] [2024-12-06 10:12:50,049] [pool-1-thread-6] Initializing /data/stefan/001_q02.txt:
[testng] [2024-12-06 10:12:51,304] [pool-1-thread-8] Initializing /data/stefan/001_q17.txt:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 44 seconds
Finished: SUCCESS