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Started by upstream project "BIOFORMATS-test-repo" build number 282 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins7846538110234780903.sh + '[' targa = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_44475_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 10:25:18,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 10:25:18,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 10:25:18,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 10:25:18,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 10:25:18,591 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 10:25:18,591 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 10:25:18,592 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 10:25:18,592 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 10:25:18,592 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1139b2f3 - End of configuration. [testng] 10:25:18,593 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3f197a46 - Registering current configuration as safe fallback point [testng] 10:25:18,593 |-INFO in ch.qos.logback.classic.util.ContextInitializer@636be97c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 447 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-06 10:25:18,604] [main] java.version = 1.8.0_342 [testng] 10:25:18,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 10:25:18,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:25:18,689 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_10-25-18.log] [testng] 10:25:18,691 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-06 10:25:18,693] [main] testng.directory = /data [testng] [2024-12-06 10:25:18,694] [main] testng.configDirectory = /config [testng] [2024-12-06 10:25:18,706] [main] testng.multiplier = 1.0 [testng] [2024-12-06 10:25:18,706] [main] testng.in-memory = false [testng] [2024-12-06 10:25:18,707] [main] testng.allow-missing = false [testng] [2024-12-06 10:25:18,707] [main] user.language = en [testng] [2024-12-06 10:25:18,707] [main] user.country = ${user.country} [testng] [2024-12-06 10:25:18,707] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-06 10:25:19,287] [main] ---------------------------------------- [testng] [2024-12-06 10:25:19,287] [main] Total files: 21 [testng] [2024-12-06 10:25:19,287] [main] Scan time: 0.58 s (27 ms/file) [testng] [2024-12-06 10:25:19,288] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-06 10:25:22,201] [pool-1-thread-1] Initializing /data/samples/UCM8.TGA: [testng] 10:25:22,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 10:25:22,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:25:22,204 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-06_10-25-22.log] [testng] 10:25:22,204 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6358153d - End of configuration. [testng] [2024-12-06 10:25:22,320] [pool-1-thread-12] Initializing /data/samples/XING_B24.TGA: [testng] 10:25:22,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 10:25:22,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:25:22,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-06_10-25-22.log] [testng] 10:25:22,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a034df9 - End of configuration. [testng] [2024-12-06 10:25:22,443] [pool-1-thread-11] Initializing /data/samples/MARBLES.TGA: [testng] 10:25:22,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 10:25:22,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:25:22,444 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-06_10-25-22.log] [testng] 10:25:22,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@172c5e18 - End of configuration. [testng] [2024-12-06 10:25:22,548] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA: [testng] 10:25:22,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 10:25:22,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:25:22,549 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-06_10-25-22.log] [testng] 10:25:22,550 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cce0d99 - End of configuration. [testng] [2024-12-06 10:25:22,656] [pool-1-thread-9] Initializing /data/samples/FLAG_T16.TGA: [testng] 10:25:22,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 10:25:22,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:25:22,657 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-06_10-25-22.log] [testng] 10:25:22,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10138055 - End of configuration. [testng] [2024-12-06 10:25:22,768] [pool-1-thread-8] Initializing /data/samples/FLAG_B24.TGA: [testng] 10:25:22,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 10:25:22,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:25:22,769 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-06_10-25-22.log] [testng] 10:25:22,769 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fe41c39 - End of configuration. [testng] [2024-12-06 10:25:22,867] [pool-1-thread-7] Initializing /data/samples/CTC16.TGA: [testng] 10:25:22,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 10:25:22,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:25:22,868 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-06_10-25-22.log] [testng] 10:25:22,868 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c3b801b - End of configuration. [testng] [2024-12-06 10:25:22,966] [pool-1-thread-6] Initializing /data/samples/XING_B16.TGA: [testng] 10:25:22,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 10:25:22,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:25:22,967 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-06_10-25-22.log] [testng] 10:25:22,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24c1092 - End of configuration. [testng] [2024-12-06 10:25:23,074] [pool-1-thread-5] Initializing /data/samples/CCM8.TGA: [testng] 10:25:23,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 10:25:23,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:25:23,075 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-06_10-25-23.log] [testng] 10:25:23,075 |-INFO in ch.qos.logback.core.sift.SiftProcessor@477f3814 - End of configuration. [testng] [2024-12-06 10:25:23,183] [pool-1-thread-4] Initializing /data/samples/FLAG_B32.TGA: [testng] 10:25:23,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 10:25:23,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:25:23,185 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-06_10-25-23.log] [testng] 10:25:23,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d4acaa4 - End of configuration. [testng] [2024-12-06 10:25:23,280] [pool-1-thread-3] Initializing /data/samples/FLAG_B16.TGA: [testng] 10:25:23,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 10:25:23,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:25:23,281 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-06_10-25-23.log] [testng] 10:25:23,281 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63fb5fb9 - End of configuration. [testng] [2024-12-06 10:25:23,381] [pool-1-thread-2] Initializing /data/samples/XING_T24.TGA: [testng] 10:25:23,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 10:25:23,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:25:23,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-06_10-25-23.log] [testng] 10:25:23,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68b752e4 - End of configuration. [testng] [2024-12-06 10:25:26,459] [pool-1-thread-1] Initializing /data/samples/CTC24.TGA: [testng] [2024-12-06 10:25:26,573] [pool-1-thread-3] Initializing /data/samples/FLAG_T32.TGA: [testng] [2024-12-06 10:25:26,680] [pool-1-thread-8] Initializing /data/samples/CBW8.TGA: [testng] [2024-12-06 10:25:26,764] [pool-1-thread-4] Initializing /data/samples/XING_B32.TGA: [testng] [2024-12-06 10:25:26,878] [pool-1-thread-7] Initializing /data/samples/UTC24.TGA: [testng] [2024-12-06 10:25:26,978] [pool-1-thread-2] Initializing /data/samples/UTC32.TGA: [testng] [2024-12-06 10:25:27,070] [pool-1-thread-10] Initializing /data/samples/UBW8.TGA: [testng] [2024-12-06 10:25:27,154] [pool-1-thread-6] Initializing /data/samples/XING_T32.TGA: [testng] [2024-12-06 10:25:27,236] [pool-1-thread-12] Initializing /data/samples/UTC16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 15 seconds Finished: SUCCESS