Started by upstream project "BIOFORMATS-test-repo" build number 282
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins4735318988814943258.sh
+ '[' jpeg2000 = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44593_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 13:59:36,999 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 13:59:37,001 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 13:59:37,001 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 13:59:37,002 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 13:59:37,002 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 13:59:37,002 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 13:59:37,003 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 13:59:37,003 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 13:59:37,003 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 13:59:37,003 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 13:59:37,003 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 13:59:37,003 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 13:59:37,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 13:59:37,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 13:59:37,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 13:59:37,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 13:59:37,257 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 13:59:37,257 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 13:59:37,258 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 13:59:37,258 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 13:59:37,258 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 13:59:37,259 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 13:59:37,259 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 256 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-06 13:59:37,269] [main] java.version = 1.8.0_342
[testng] 13:59:37,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 13:59:37,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 13:59:37,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_13-59-37.log]
[testng] 13:59:37,318 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-06 13:59:37,320] [main] testng.directory = /data
[testng] [2024-12-06 13:59:37,320] [main] testng.configDirectory = /config
[testng] [2024-12-06 13:59:37,331] [main] testng.multiplier = 1.0
[testng] [2024-12-06 13:59:37,332] [main] testng.in-memory = false
[testng] [2024-12-06 13:59:37,332] [main] testng.allow-missing = false
[testng] [2024-12-06 13:59:37,332] [main] user.language = en
[testng] [2024-12-06 13:59:37,332] [main] user.country = ${user.country}
[testng] [2024-12-06 13:59:37,332] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-06 13:59:57,364] [main] ----------------------------------------
[testng] [2024-12-06 13:59:57,364] [main] Total files: 31
[testng] [2024-12-06 13:59:57,364] [main] Scan time: 20.032 s (646 ms/file)
[testng] [2024-12-06 13:59:57,364] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 30 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-06 14:00:23,527] [pool-1-thread-1] Initializing /data/vikram/Captured 3.jp2:
[testng] 14:00:23,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 14:00:23,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:00:23,529 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-06_14-00-23.log]
[testng] 14:00:23,530 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bd9fa6 - End of configuration.
[testng] [2024-12-06 14:00:24,019] [pool-1-thread-12] Initializing /data/vikram/Captured 5.jp2:
[testng] 14:00:24,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 14:00:24,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:00:24,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-06_14-00-24.log]
[testng] 14:00:24,020 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15fdf624 - End of configuration.
[testng] [2024-12-06 14:00:24,451] [pool-1-thread-11] Initializing /data/venu/Multichannel 3.jp2:
[testng] 14:00:24,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 14:00:24,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:00:24,452 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-06_14-00-24.log]
[testng] 14:00:24,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a38e121 - End of configuration.
[testng] [2024-12-06 14:00:24,923] [pool-1-thread-10] Initializing /data/david/000000_000001.jpx:
[testng] 14:00:24,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 14:00:24,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:00:24,924 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-06_14-00-24.log]
[testng] 14:00:24,924 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c2732d2 - End of configuration.
[testng] [2024-12-06 14:00:25,553] [pool-1-thread-9] Initializing /data/david/cy5-tph.jp2:
[testng] 14:00:25,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 14:00:25,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:00:25,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-06_14-00-25.log]
[testng] 14:00:25,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4479a44b - End of configuration.
[testng] [2024-12-06 14:00:25,960] [pool-1-thread-8] Initializing /data/vikram/Captured 4.jp2:
[testng] 14:00:25,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 14:00:25,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:00:25,961 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-06_14-00-25.log]
[testng] 14:00:25,962 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c0002c9 - End of configuration.
[testng] [2024-12-06 14:00:26,378] [pool-1-thread-7] Initializing /data/venu/Multichannel 3a.jpg:
[testng] 14:00:26,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 14:00:26,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:00:26,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-06_14-00-26.log]
[testng] 14:00:26,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55b9a984 - End of configuration.
[testng] [2024-12-06 14:00:26,486] [pool-1-thread-6] Initializing /data/frans/flower.jp2:
[testng] 14:00:26,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 14:00:26,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:00:26,487 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-06_14-00-26.log]
[testng] 14:00:26,488 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f48f184 - End of configuration.
[testng] [2024-12-06 14:00:27,188] [pool-1-thread-5] Initializing /data/misc/clown-rgb.jp2:
[testng] 14:00:27,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 14:00:27,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:00:27,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-06_14-00-27.log]
[testng] 14:00:27,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@727addd - End of configuration.
[testng] [2024-12-06 14:00:27,542] [pool-1-thread-4] Initializing /data/misc/clown-rgb.jbig:
[testng] 14:00:27,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 14:00:27,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:00:27,543 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-06_14-00-27.log]
[testng] 14:00:27,543 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30de124e - End of configuration.
[testng] [2024-12-06 14:00:28,615] [pool-1-thread-3] Initializing /data/aryeh/flour 12.jp2:
[testng] 14:00:28,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 14:00:28,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:00:28,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-06_14-00-28.log]
[testng] 14:00:28,617 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75567d3c - End of configuration.
[testng] [2024-12-06 14:00:28,991] [pool-1-thread-2] Initializing /data/mike/LCM-4-3-color-cleaned.tiff:
[testng] 14:00:28,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 14:00:28,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:00:28,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-06_14-00-28.log]
[testng] 14:00:28,993 |-INFO in ch.qos.logback.core.sift.SiftProcessor@294b678a - End of configuration.
[testng] [2024-12-06 14:00:36,979] [pool-1-thread-7] Initializing /data/big-images/4kx4k.jpf:
[testng] [2024-12-06 14:00:38,949] [pool-1-thread-5] Initializing /data/vikram/Captured 1.jp2:
[testng] [2024-12-06 14:00:40,578] [pool-1-thread-8] Initializing /data/david/multichannel-3d-MBF-type.jpx:
[testng] [2024-12-06 14:00:41,835] [pool-1-thread-1] Initializing /data/mike/LCM-4-3-color-cleaned.jp2:
[testng] [2024-12-06 14:00:43,117] [pool-1-thread-12] Initializing /data/david/multichannel-2d test.jp2:
[testng] [2024-12-06 14:00:43,948] [pool-1-thread-3] Initializing /data/misc/clown-rgb.jpc:
[testng] [2024-12-06 14:00:45,154] [pool-1-thread-4] Initializing /data/angel/052_L050071_56_x2hv.jp2:
[testng] [2024-12-06 14:00:48,119] [pool-1-thread-10] Initializing /data/big-images/2kx2k.jpf:
[testng] [2024-12-06 14:00:49,010] [pool-1-thread-2] Initializing /data/david/C1R1_FOS.jp2:
[testng] [2024-12-06 14:00:52,503] [pool-1-thread-3] Initializing /data/kraig/head.jp2:
[testng] [2024-12-06 14:00:53,047] [pool-1-thread-5] Initializing /data/vikram/Captured 2.jp2:
[testng] [2024-12-06 14:00:55,290] [pool-1-thread-11] Initializing /data/angel/002_L050071_32_01_09_x2.jp2:
[testng] [2024-12-06 14:00:59,102] [pool-1-thread-6] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx:
[testng] [2024-12-06 14:01:03,033] [pool-1-thread-5] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2:
[testng] [2024-12-06 14:01:03,549] [pool-1-thread-3] Initializing /data/big-images/8kx8k.jpf:
[testng] [2024-12-06 14:01:04,211] [pool-1-thread-1] Initializing /data/david/multichannel-2d test-non MBF-type.jp2:
[testng] [2024-12-06 14:01:06,552] [pool-1-thread-10] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff:
[testng] [2024-12-06 14:01:10,410] [pool-1-thread-4] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1590, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 7 minutes 32 seconds
Finished: SUCCESS