Started by upstream project "BIOFORMATS-test-repo" build number 282
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins12481002829982012044.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44595_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 14:08:30,006 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 14:08:30,008 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 14:08:30,008 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 14:08:30,009 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 14:08:30,009 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 14:08:30,009 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 14:08:30,010 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 14:08:30,010 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 14:08:30,010 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 14:08:30,011 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 14:08:30,011 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 14:08:30,011 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 14:08:30,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 14:08:30,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 14:08:30,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 14:08:30,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 14:08:30,282 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 14:08:30,282 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 14:08:30,282 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 14:08:30,283 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 14:08:30,283 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 14:08:30,284 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 14:08:30,284 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 274 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-06 14:08:30,294] [main] java.version = 1.8.0_342
[testng] 14:08:30,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 14:08:30,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:08:30,344 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_14-08-30.log]
[testng] 14:08:30,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-06 14:08:30,348] [main] testng.directory = /data
[testng] [2024-12-06 14:08:30,348] [main] testng.configDirectory = /config
[testng] [2024-12-06 14:08:30,360] [main] testng.multiplier = 1.0
[testng] [2024-12-06 14:08:30,361] [main] testng.in-memory = false
[testng] [2024-12-06 14:08:30,361] [main] testng.allow-missing = false
[testng] [2024-12-06 14:08:30,361] [main] user.language = en
[testng] [2024-12-06 14:08:30,361] [main] user.country = ${user.country}
[testng] [2024-12-06 14:08:30,361] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-06 14:08:34,285] [main] ----------------------------------------
[testng] [2024-12-06 14:08:34,285] [main] Total files: 22
[testng] [2024-12-06 14:08:34,285] [main] Scan time: 3.924 s (178 ms/file)
[testng] [2024-12-06 14:08:34,285] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-06 14:08:54,300] [pool-1-thread-1] Initializing /data/converted/NESb_C2_TP7.seq:
[testng] 14:08:54,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 14:08:54,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:08:54,301 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-06_14-08-54.log]
[testng] 14:08:54,302 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1738c64c - End of configuration.
[testng] [2024-12-06 14:08:54,714] [pool-1-thread-12] Initializing /data/converted/clown8c.tif:
[testng] 14:08:54,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 14:08:54,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:08:54,715 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-06_14-08-54.log]
[testng] 14:08:54,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16f86803 - End of configuration.
[testng] [2024-12-06 14:08:55,585] [pool-1-thread-11] Initializing /data/samples/TISSUE.TIF:
[testng] 14:08:55,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 14:08:55,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:08:55,586 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-06_14-08-55.log]
[testng] 14:08:55,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69e82094 - End of configuration.
[testng] [2024-12-06 14:08:56,587] [pool-1-thread-10] Initializing /data/converted/dub01.seq:
[testng] 14:08:56,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 14:08:56,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:08:56,588 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-06_14-08-56.log]
[testng] 14:08:56,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f44bb33 - End of configuration.
[testng] [2024-12-06 14:08:56,930] [pool-1-thread-9] Initializing /data/xiuwen/head2.seq:
[testng] 14:08:56,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 14:08:56,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:08:56,931 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-06_14-08-56.log]
[testng] 14:08:56,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b5fd673 - End of configuration.
[testng] [2024-12-06 14:08:57,351] [pool-1-thread-8] Initializing /data/samples/PROBE.TIF:
[testng] 14:08:57,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 14:08:57,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:08:57,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-06_14-08-57.log]
[testng] 14:08:57,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e62f409 - End of configuration.
[testng] [2024-12-06 14:08:57,856] [pool-1-thread-7] Initializing /data/converted/clown.ipw:
[testng] 14:08:57,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 14:08:57,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:08:57,857 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-06_14-08-57.log]
[testng] 14:08:57,857 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cbc2aec - End of configuration.
[testng] [2024-12-06 14:08:58,216] [pool-1-thread-6] Initializing /data/samples/HEART.SEQ:
[testng] 14:08:58,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 14:08:58,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:08:58,217 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-06_14-08-58.log]
[testng] 14:08:58,217 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c6bd42c - End of configuration.
[testng] [2024-12-06 14:08:58,637] [pool-1-thread-5] Initializing /data/converted/mitosis-test.seq:
[testng] 14:08:58,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 14:08:58,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:08:58,638 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-06_14-08-58.log]
[testng] 14:08:58,638 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dee9026 - End of configuration.
[testng] [2024-12-06 14:08:59,031] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.ipw:
[testng] 14:08:59,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 14:08:59,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:08:59,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-06_14-08-59.log]
[testng] 14:08:59,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@270f0323 - End of configuration.
[testng] [2024-12-06 14:08:59,461] [pool-1-thread-3] Initializing /data/converted/mitosis-test.tif:
[testng] 14:08:59,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 14:08:59,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:08:59,462 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-06_14-08-59.log]
[testng] 14:08:59,463 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40ce7006 - End of configuration.
[testng] [2024-12-06 14:09:00,369] [pool-1-thread-2] Initializing /data/converted/clown.tif:
[testng] 14:09:00,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 14:09:00,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:09:00,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-06_14-09-00.log]
[testng] 14:09:00,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fca4b36 - End of configuration.
[testng] [2024-12-06 14:09:05,887] [pool-1-thread-2] Initializing /data/converted/clown.seq:
[testng] [2024-12-06 14:09:06,222] [pool-1-thread-5] Initializing /data/converted/clown8c.seq:
[testng] [2024-12-06 14:09:06,625] [pool-1-thread-7] Initializing /data/converted/dub01.ipw:
[testng] [2024-12-06 14:09:06,939] [pool-1-thread-8] Initializing /data/alex/AFAset0003.ips:
[testng] [2024-12-06 14:09:07,279] [pool-1-thread-6] Initializing /data/converted/dub01.pic:
[testng] [2024-12-06 14:09:07,643] [pool-1-thread-10] Initializing /data/converted/clown8c.ipw:
[testng] [2024-12-06 14:09:08,034] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.tiff:
[testng] [2024-12-06 14:09:09,507] [pool-1-thread-1] Initializing /data/converted/mitosis-test.ipw:
[testng] [2024-12-06 14:09:13,065] [pool-1-thread-11] Initializing /data/samples/FLDUAL.TIF:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 2 minutes 58 seconds
Finished: SUCCESS