Started by upstream project "BIOFORMATS-test-repo" build number 283
originally caused by:
Started by upstream project "Trigger" build number 302
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins17872949701835845796.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44612_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 00:22:24,943 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:22:24,945 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 00:22:24,945 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:22:24,946 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:22:24,946 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:22:24,947 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:22:24,947 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:22:24,947 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:22:24,948 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:22:24,948 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:22:24,948 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:22:24,949 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:22:25,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:22:25,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:22:25,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:22:25,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:22:25,158 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:22:25,158 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:22:25,158 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:22:25,159 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:22:25,159 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 00:22:25,160 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 00:22:25,160 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 212 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-07 00:22:25,169] [main] java.version = 11.0.16
[testng] 00:22:25,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:22:25,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:25,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-07_00-22-25.log]
[testng] 00:22:25,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-12-07 00:22:25,221] [main] testng.directory = /data
[testng] [2024-12-07 00:22:25,222] [main] testng.configDirectory = /config
[testng] [2024-12-07 00:22:25,232] [main] testng.multiplier = 1.0
[testng] [2024-12-07 00:22:25,234] [main] testng.in-memory = false
[testng] [2024-12-07 00:22:25,234] [main] testng.allow-missing = false
[testng] [2024-12-07 00:22:25,234] [main] user.language = en
[testng] [2024-12-07 00:22:25,234] [main] user.country = ${user.country}
[testng] [2024-12-07 00:22:25,234] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-07 00:22:48,757] [main] ----------------------------------------
[testng] [2024-12-07 00:22:48,758] [main] Total files: 315
[testng] [2024-12-07 00:22:48,758] [main] Scan time: 23.523 s (74 ms/file)
[testng] [2024-12-07 00:22:48,758] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 192 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-07 00:35:07,375] [pool-1-thread-1] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] 00:35:07,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:35:07,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:07,378 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-07_00-35-07.log]
[testng] 00:35:07,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a63eee2 - End of configuration.
[testng] [2024-12-07 00:35:07,955] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] 00:35:07,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:35:07,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:07,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-07_00-35-07.log]
[testng] 00:35:07,956 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5aaa111f - End of configuration.
[testng] [2024-12-07 00:35:08,220] [pool-1-thread-11] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] 00:35:08,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:35:08,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:08,221 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-07_00-35-08.log]
[testng] 00:35:08,221 |-INFO in ch.qos.logback.core.sift.SiftProcessor@704d585a - End of configuration.
[testng] [2024-12-07 00:35:08,406] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] 00:35:08,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:35:08,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:08,407 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-07_00-35-08.log]
[testng] 00:35:08,407 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2930285a - End of configuration.
[testng] [2024-12-07 00:35:08,671] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] 00:35:08,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:35:08,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:08,672 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-07_00-35-08.log]
[testng] 00:35:08,672 |-INFO in ch.qos.logback.core.sift.SiftProcessor@519bd64e - End of configuration.
[testng] [2024-12-07 00:35:08,808] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] 00:35:08,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:35:08,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:08,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-07_00-35-08.log]
[testng] 00:35:08,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c24a272 - End of configuration.
[testng] [2024-12-07 00:35:09,090] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] 00:35:09,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:35:09,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:09,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-07_00-35-09.log]
[testng] 00:35:09,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12627798 - End of configuration.
[testng] [2024-12-07 00:35:09,451] [pool-1-thread-6] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] 00:35:09,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:35:09,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:09,452 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-07_00-35-09.log]
[testng] 00:35:09,453 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17de5b22 - End of configuration.
[testng] [2024-12-07 00:35:09,803] [pool-1-thread-5] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] 00:35:09,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:35:09,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:09,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-07_00-35-09.log]
[testng] 00:35:09,804 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75901396 - End of configuration.
[testng] [2024-12-07 00:35:10,300] [pool-1-thread-4] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] 00:35:10,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:35:10,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:10,301 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-07_00-35-10.log]
[testng] 00:35:10,301 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e131068 - End of configuration.
[testng] [2024-12-07 00:35:10,878] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] 00:35:10,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:35:10,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:10,879 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-07_00-35-10.log]
[testng] 00:35:10,879 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b5bba60 - End of configuration.
[testng] [2024-12-07 00:35:11,753] [pool-1-thread-2] Initializing /data/qa-17270/image1.oir:
[testng] 00:35:11,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:35:11,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:11,754 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-07_00-35-11.log]
[testng] 00:35:11,754 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6157ba45 - End of configuration.
[testng] [2024-12-07 00:35:16,123] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-12-07 00:35:17,514] [pool-1-thread-12] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] [2024-12-07 00:35:17,842] [pool-1-thread-4] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-12-07 00:35:20,527] [pool-1-thread-10] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] [2024-12-07 00:35:21,170] [pool-1-thread-8] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-12-07 00:35:21,985] [pool-1-thread-7] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] [2024-12-07 00:35:22,506] [pool-1-thread-6] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-12-07 00:35:22,530] [pool-1-thread-3] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] [2024-12-07 00:35:24,116] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-12-07 00:35:25,515] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-12-07 00:35:28,486] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-12-07 00:35:31,625] [pool-1-thread-3] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] [2024-12-07 00:35:32,065] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-12-07 00:35:32,686] [pool-1-thread-7] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-12-07 00:35:33,127] [pool-1-thread-5] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-12-07 00:35:33,630] [pool-1-thread-12] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-12-07 00:35:34,165] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-12-07 00:35:35,590] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-12-07 00:35:38,978] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] [2024-12-07 00:35:39,487] [pool-1-thread-5] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2024-12-07 00:35:40,008] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-12-07 00:35:40,503] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] [2024-12-07 00:35:41,197] [pool-1-thread-8] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-12-07 00:35:46,973] [pool-1-thread-11] Initializing /data/olympus/XYZt.oir:
[testng] [2024-12-07 00:35:48,879] [pool-1-thread-5] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-12-07 00:35:49,390] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-12-07 00:35:49,771] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-12-07 00:35:51,694] [pool-1-thread-12] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-12-07 00:35:52,068] [pool-1-thread-3] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-12-07 00:35:55,317] [pool-1-thread-6] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-12-07 00:35:56,508] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-12-07 00:35:58,127] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-12-07 00:35:58,926] [pool-1-thread-6] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-12-07 00:35:59,306] [pool-1-thread-12] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-12-07 00:36:01,821] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-12-07 00:36:02,483] [pool-1-thread-3] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-12-07 00:36:03,056] [pool-1-thread-11] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-12-07 00:36:04,235] [pool-1-thread-6] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-12-07 00:36:04,645] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] [2024-12-07 00:36:05,219] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] [2024-12-07 00:36:06,534] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-12-07 00:36:08,273] [pool-1-thread-11] Initializing /data/qa-17922/example_multipart.oir:
[testng] [2024-12-07 00:36:30,792] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-12-07 00:36:31,852] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] [2024-12-07 00:36:32,959] [pool-1-thread-10] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-12-07 00:37:01,564] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng] [2024-12-07 00:37:02,534] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-12-07 00:37:02,939] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] [2024-12-07 00:37:03,373] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-12-07 00:37:04,958] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-12-07 00:37:06,366] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] [2024-12-07 00:37:08,345] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] [2024-12-07 00:37:08,694] [pool-1-thread-6] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2024-12-07 00:37:09,753] [pool-1-thread-9] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-12-07 00:37:10,030] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-12-07 00:37:10,333] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-12-07 00:37:11,084] [pool-1-thread-5] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] [2024-12-07 00:37:11,671] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2024-12-07 00:37:15,604] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] [2024-12-07 00:37:17,616] [pool-1-thread-9] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-12-07 00:37:19,654] [pool-1-thread-8] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] [2024-12-07 00:37:20,609] [pool-1-thread-12] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-12-07 00:37:27,403] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-12-07 00:37:29,640] [pool-1-thread-9] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2024-12-07 00:37:30,742] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] [2024-12-07 00:37:31,895] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-12-07 00:37:33,501] [pool-1-thread-7] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-12-07 00:37:33,899] [pool-1-thread-5] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-12-07 00:37:37,736] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-12-07 00:37:38,306] [pool-1-thread-9] Initializing /data/qa-17270/stack1.ome.tif:
[testng] [2024-12-07 00:37:41,363] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-12-07 00:37:48,029] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-12-07 00:37:48,977] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-12-07 00:37:49,835] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-12-07 00:37:51,161] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] [2024-12-07 00:37:53,516] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] [2024-12-07 00:37:54,483] [pool-1-thread-12] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-12-07 00:37:56,022] [pool-1-thread-8] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2024-12-07 00:37:57,156] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] [2024-12-07 00:37:59,061] [pool-1-thread-9] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-12-07 00:38:00,081] [pool-1-thread-7] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-12-07 00:38:05,013] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-12-07 00:38:05,650] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-12-07 00:38:07,311] [pool-1-thread-12] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-12-07 00:38:09,186] [pool-1-thread-9] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-12-07 00:38:13,073] [pool-1-thread-5] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] [2024-12-07 00:38:14,456] [pool-1-thread-8] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-12-07 00:38:16,199] [pool-1-thread-12] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-12-07 00:38:20,944] [pool-1-thread-5] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-12-07 00:38:21,731] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-12-07 00:38:23,350] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] [2024-12-07 00:38:27,807] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-12-07 00:38:28,464] [pool-1-thread-9] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] [2024-12-07 00:39:22,133] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir:
[testng] [2024-12-07 00:39:25,190] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-12-07 00:39:26,611] [pool-1-thread-8] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] [2024-12-07 00:39:27,761] [pool-1-thread-12] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-12-07 00:39:28,361] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-12-07 00:39:36,278] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] [2024-12-07 00:39:37,799] [pool-1-thread-12] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] [2024-12-07 00:39:38,252] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-12-07 00:39:39,241] [pool-1-thread-8] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-12-07 00:39:41,100] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] [2024-12-07 00:39:48,340] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] [2024-12-07 00:39:53,515] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-12-07 00:39:54,587] [pool-1-thread-6] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-12-07 00:39:55,276] [pool-1-thread-8] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-12-07 00:39:56,890] [pool-1-thread-12] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir:
[testng] [2024-12-07 00:40:00,180] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-12-07 00:40:04,051] [pool-1-thread-8] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-12-07 00:40:04,999] [pool-1-thread-6] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-12-07 00:40:05,942] [pool-1-thread-3] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-12-07 00:40:10,216] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-12-07 00:40:10,904] [pool-1-thread-7] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-12-07 00:40:12,643] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-12-07 00:40:13,763] [pool-1-thread-12] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-12-07 00:40:14,487] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] [2024-12-07 00:40:14,973] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-12-07 00:40:19,432] [pool-1-thread-7] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-12-07 00:40:19,883] [pool-1-thread-1] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] [2024-12-07 00:40:20,717] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-12-07 00:40:21,464] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.oir:
[testng] [2024-12-07 00:40:24,647] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-12-07 00:40:26,257] [pool-1-thread-6] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-12-07 00:40:29,539] [pool-1-thread-7] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-12-07 00:40:30,963] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] [2024-12-07 00:40:32,027] [pool-1-thread-12] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-12-07 00:40:33,428] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-12-07 00:40:34,208] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-12-07 00:40:36,940] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] [2024-12-07 00:40:38,037] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-12-07 00:40:39,233] [pool-1-thread-6] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-12-07 00:40:41,580] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-12-07 00:40:42,607] [pool-1-thread-8] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-12-07 00:40:43,484] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] [2024-12-07 00:40:44,765] [pool-1-thread-7] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-12-07 00:40:47,417] [pool-1-thread-6] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-12-07 00:40:50,096] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] [2024-12-07 00:40:52,571] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-12-07 00:40:53,335] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-12-07 00:40:54,165] [pool-1-thread-7] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] [2024-12-07 00:40:54,779] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] [2024-12-07 00:40:57,722] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-12-07 00:41:04,046] [pool-1-thread-6] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] [2024-12-07 00:41:06,781] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-12-07 00:41:07,803] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] [2024-12-07 00:41:09,941] [pool-1-thread-11] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-12-07 00:41:14,341] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2024-12-07 00:41:17,750] [pool-1-thread-10] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-12-07 00:41:21,394] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-12-07 00:41:23,865] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-12-07 00:41:26,157] [pool-1-thread-8] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2024-12-07 00:41:26,787] [pool-1-thread-3] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-12-07 00:41:31,100] [pool-1-thread-10] Initializing /data/qa-17270/alexa488.oir:
[testng] [2024-12-07 00:41:33,108] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-12-07 00:41:37,628] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-12-07 00:41:40,132] [pool-1-thread-2] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info:
[testng] [2024-12-07 00:41:50,675] [pool-1-thread-3] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-12-07 00:41:51,641] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-12-07 00:41:58,467] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-12-07 00:42:01,206] [pool-1-thread-7] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-12-07 00:42:07,484] [pool-1-thread-8] Initializing /data/qa-17270/stack1.oir:
[testng] [2024-12-07 00:42:10,290] [pool-1-thread-11] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-12-07 00:42:11,794] [pool-1-thread-1] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] [2024-12-07 00:42:14,072] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-12-07 00:42:15,269] [pool-1-thread-6] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-12-07 00:42:21,157] [pool-1-thread-7] Initializing /data/cudmore/20190401__0005.oir:
[testng] [2024-12-07 00:42:27,038] [pool-1-thread-1] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] [2024-12-07 00:42:27,954] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] [2024-12-07 00:42:31,475] [pool-1-thread-3] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-12-07 00:42:31,843] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-12-07 00:42:34,080] [pool-1-thread-11] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-12-07 00:42:36,947] [pool-1-thread-1] Initializing /data/qa-17335/1.oir:
[testng] [2024-12-07 00:42:37,583] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-12-07 00:42:40,421] [pool-1-thread-6] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-12-07 00:42:43,688] [pool-1-thread-3] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-12-07 00:42:45,229] [pool-1-thread-11] Initializing /data/qa-17919/f10187.oir:
[testng] [2024-12-07 00:43:05,395] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] [2024-12-07 00:43:07,371] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-12-07 00:43:08,549] [pool-1-thread-10] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 10176, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 53 minutes 18 seconds
Finished: SUCCESS