Started by upstream project "BIOFORMATS-test-repo" build number 283
originally caused by:
 Started by upstream project "Trigger" build number 302
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10
[BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins4575219454764991440.sh
+ '[' leica-tcs = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44744_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 04:13:18,884 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 04:13:18,887 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 04:13:18,887 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 04:13:18,889 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 04:13:18,890 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 04:13:18,891 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 04:13:18,891 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 04:13:18,891 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 04:13:18,892 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 04:13:18,893 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 04:13:18,893 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 04:13:18,893 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 04:13:19,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 04:13:19,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 04:13:19,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 04:13:19,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 04:13:19,130 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 04:13:19,130 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 04:13:19,130 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 04:13:19,130 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 04:13:19,131 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 04:13:19,131 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 04:13:19,132 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 240 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-12-07 04:13:19,142] [main] java.version = 11.0.16
   [testng] 04:13:19,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 04:13:19,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:13:19,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-07_04-13-19.log]
   [testng] 04:13:19,199 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-12-07 04:13:19,201] [main] testng.directory = /data
   [testng] [2024-12-07 04:13:19,201] [main] testng.configDirectory = /config
   [testng] [2024-12-07 04:13:19,215] [main] testng.multiplier = 1.0
   [testng] [2024-12-07 04:13:19,216] [main] testng.in-memory = false
   [testng] [2024-12-07 04:13:19,216] [main] testng.allow-missing = false
   [testng] [2024-12-07 04:13:19,217] [main] user.language = en
   [testng] [2024-12-07 04:13:19,217] [main] user.country = ${user.country}
   [testng] [2024-12-07 04:13:19,217] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-12-07 04:13:31,426] [main] ----------------------------------------
   [testng] [2024-12-07 04:13:31,426] [main] Total files: 944
   [testng] [2024-12-07 04:13:31,426] [main] Scan time: 12.209 s (12 ms/file)
   [testng] [2024-12-07 04:13:31,426] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-12-07 04:15:11,986] [pool-1-thread-1] Initializing /data/stjude/AntoDayzerocy3OVP.tif: 
   [testng] 04:15:11,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 04:15:11,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:15:11,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-07_04-15-11.log]
   [testng] 04:15:11,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@236f434f - End of configuration.
   [testng] [2024-12-07 04:15:13,154] [pool-1-thread-12] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF: 
   [testng] 04:15:13,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 04:15:13,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:15:13,155 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-07_04-15-13.log]
   [testng] 04:15:13,155 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2aae21e9 - End of configuration.
   [testng] [2024-12-07 04:15:14,099] [pool-1-thread-11] Initializing /data/stjude/AntoDay4dblmy2GRP.tif: 
   [testng] 04:15:14,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 04:15:14,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:15:14,100 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-07_04-15-14.log]
   [testng] 04:15:14,101 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cf7f0a1 - End of configuration.
   [testng] [2024-12-07 04:15:15,267] [pool-1-thread-10] Initializing /data/stjude/AntoDayzerocy3GRP.tif: 
   [testng] 04:15:15,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 04:15:15,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:15:15,268 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-07_04-15-15.log]
   [testng] 04:15:15,268 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31b1d772 - End of configuration.
   [testng] [2024-12-07 04:15:16,498] [pool-1-thread-9] Initializing /data/primate/Leica_Image.tif: 
   [testng] 04:15:16,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 04:15:16,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:15:16,499 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-07_04-15-16.log]
   [testng] 04:15:16,499 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e76cdec - End of configuration.
   [testng] [2024-12-07 04:15:17,668] [pool-1-thread-8] Initializing /data/stjude/Antoday1dblcatsglGRP.tif: 
   [testng] 04:15:17,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 04:15:17,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:15:17,669 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-07_04-15-17.log]
   [testng] 04:15:17,670 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39a8b45a - End of configuration.
   [testng] [2024-12-07 04:15:18,714] [pool-1-thread-7] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif: 
   [testng] 04:15:18,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 04:15:18,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:15:18,715 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-07_04-15-18.log]
   [testng] 04:15:18,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15a5e803 - End of configuration.
   [testng] [2024-12-07 04:15:19,828] [pool-1-thread-6] Initializing /data/brian/Series002_z01.tif: 
   [testng] 04:15:19,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 04:15:19,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:15:19,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-07_04-15-19.log]
   [testng] 04:15:19,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@634a641d - End of configuration.
   [testng] [2024-12-07 04:15:21,397] [pool-1-thread-5] Initializing /data/martin/Series028_z00_ch00.tif: 
   [testng] 04:15:21,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 04:15:21,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:15:21,398 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-07_04-15-21.log]
   [testng] 04:15:21,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c998469 - End of configuration.
   [testng] [2024-12-07 04:15:22,845] [pool-1-thread-4] Initializing /data/stjude/AntoDay1dblGRP.tif: 
   [testng] 04:15:22,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 04:15:22,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:15:22,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-07_04-15-22.log]
   [testng] 04:15:22,846 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21e62722 - End of configuration.
   [testng] [2024-12-07 04:15:23,943] [pool-1-thread-3] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif: 
   [testng] 04:15:23,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 04:15:23,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:15:23,944 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-07_04-15-23.log]
   [testng] 04:15:23,945 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76a50b1d - End of configuration.
   [testng] [2024-12-07 04:16:26,717] [pool-1-thread-2] Initializing /data/brian/Series002_z00_ch00.tif: 
   [testng] 04:16:26,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 04:16:26,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:16:26,718 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-07_04-16-26.log]
   [testng] 04:16:26,736 |-INFO in ch.qos.logback.core.sift.SiftProcessor@514aa4ff - End of configuration.
   [testng] [2024-12-07 04:16:38,585] [pool-1-thread-12] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif: 
   [testng] [2024-12-07 04:16:40,601] [pool-1-thread-9] Initializing /data/stjude/AntoDay4dblmyGRP.tif: 
   [testng] [2024-12-07 04:16:43,876] [pool-1-thread-6] Initializing /data/stjude/Antoday1dblmysglGRP.tif: 
   [testng] 05:31:21,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 05:31:21,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:31:21,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-07_05-31-21.log]
   [testng] 05:31:21,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a17b2e3 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 78 minutes 5 seconds
Finished: SUCCESS