Started by upstream project "BIOFORMATS-test-repo" build number 284
originally caused by:
Started by upstream project "Trigger" build number 303
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins6533846330632587245.sh
+ '[' canon = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44809_merge_ci -v /uod/idr/repos/curated/canon:/data -v /uod/idr-scratch/merge-ci/curated/canon:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:48:42,991 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:48:42,992 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 00:48:42,992 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:48:42,993 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:48:42,994 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:48:42,994 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:48:42,995 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:48:42,995 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:48:42,995 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:48:42,996 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:48:42,996 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:48:42,996 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:48:43,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:48:43,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:48:43,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:48:43,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:48:43,250 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:48:43,250 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:48:43,250 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:48:43,251 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:48:43,251 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 00:48:43,252 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 00:48:43,252 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 257 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-08 00:48:43,261] [main] java.version = 17.0.2
[testng] 00:48:43,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:48:43,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:48:43,306 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-08_00-48-43.log]
[testng] 00:48:43,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-12-08 00:48:43,309] [main] testng.directory = /data
[testng] [2024-12-08 00:48:43,310] [main] testng.configDirectory = /config
[testng] [2024-12-08 00:48:43,318] [main] testng.multiplier = 1.0
[testng] [2024-12-08 00:48:43,319] [main] testng.in-memory = false
[testng] [2024-12-08 00:48:43,320] [main] testng.allow-missing = false
[testng] [2024-12-08 00:48:43,320] [main] user.language = en
[testng] [2024-12-08 00:48:43,320] [main] user.country = ${user.country}
[testng] [2024-12-08 00:48:43,320] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-08 00:48:48,813] [main] ----------------------------------------
[testng] [2024-12-08 00:48:48,813] [main] Total files: 13
[testng] [2024-12-08 00:48:48,813] [main] Scan time: 5.493 s (422 ms/file)
[testng] [2024-12-08 00:48:48,813] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-08 00:48:56,840] [pool-1-thread-1] Initializing /data/cls/_N5Y0001.CR2:
[testng] 00:48:56,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:48:56,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:48:56,842 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-08_00-48-56.log]
[testng] 00:48:56,843 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d03cb69 - End of configuration.
[testng] [2024-12-08 00:48:57,300] [pool-1-thread-12] Initializing /data/pete/DNG-CR2.CR2:
[testng] 00:48:57,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:48:57,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:48:57,302 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-08_00-48-57.log]
[testng] 00:48:57,302 |-INFO in ch.qos.logback.core.sift.SiftProcessor@124e2858 - End of configuration.
[testng] [2024-12-08 00:48:57,992] [pool-1-thread-11] Initializing /data/pete/Raw-CR2.CR2:
[testng] 00:48:57,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:48:57,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:48:57,993 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-08_00-48-57.log]
[testng] 00:48:57,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50cfda85 - End of configuration.
[testng] [2024-12-08 00:48:58,836] [pool-1-thread-10] Initializing /data/pete/Raw-JPG.JPG:
[testng] 00:48:58,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:48:58,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:48:58,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-08_00-48-58.log]
[testng] 00:48:58,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a9bce8 - End of configuration.
[testng] [2024-12-08 00:48:59,732] [pool-1-thread-9] Initializing /data/pete/Learning to Fly.JPG:
[testng] 00:48:59,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:48:59,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:48:59,734 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-08_00-48-59.log]
[testng] 00:48:59,735 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32c25ca3 - End of configuration.
[testng] [2024-12-08 00:49:00,159] [pool-1-thread-8] Initializing /data/pete/DNG-WAV.WAV:
[testng] 00:49:00,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:49:00,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:49:00,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-08_00-49-00.log]
[testng] 00:49:00,160 |-INFO in ch.qos.logback.core.sift.SiftProcessor@841c845 - End of configuration.
[testng] [2024-12-08 00:49:00,637] [pool-1-thread-7] Initializing /data/pete/DNG-CRW.CRW:
[testng] 00:49:00,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:49:00,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:49:00,639 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-08_00-49-00.log]
[testng] 00:49:00,640 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70e72a3 - End of configuration.
[testng] [2024-12-08 00:49:01,088] [pool-1-thread-6] Initializing /data/kinor/2013_03_08_0808.CR2:
[testng] 00:49:01,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:49:01,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:49:01,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-08_00-49-01.log]
[testng] 00:49:01,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@439c9610 - End of configuration.
[testng] [2024-12-08 00:49:01,537] [pool-1-thread-5] Initializing /data/pete/DNG-JPG.JPG:
[testng] 00:49:01,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:49:01,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:49:01,538 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-08_00-49-01.log]
[testng] 00:49:01,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@214656de - End of configuration.
[testng] [2024-12-08 00:49:01,863] [pool-1-thread-4] Initializing /data/pete/DNG-THM.THM:
[testng] 00:49:01,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:49:01,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:49:01,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-08_00-49-01.log]
[testng] 00:49:01,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6dac20d - End of configuration.
[testng] [2024-12-08 00:49:02,685] [pool-1-thread-3] Initializing /data/pete/Raw-CRW.CRW:
[testng] 00:49:02,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:49:02,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:49:02,687 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-08_00-49-02.log]
[testng] 00:49:02,687 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c5eccce - End of configuration.
[testng] [2024-12-08 00:49:04,994] [pool-1-thread-2] Initializing /data/pete/Raw-THM.THM:
[testng] 00:49:04,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:49:04,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:49:04,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-08_00-49-04.log]
[testng] 00:49:04,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@475428fe - End of configuration.
[testng] [2024-12-08 00:49:12,939] [pool-1-thread-1] Initializing /data/pete/Raw-WAV.WAV:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 43 seconds
Finished: SUCCESS