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Started by upstream project "BIOFORMATS-test-repo" build number 284
originally caused by:
 Started by upstream project "Trigger" build number 303
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins7065115698641944978.sh
+ '[' minc = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44837_merge_ci -v /uod/idr/repos/curated/minc:/data -v /uod/idr-scratch/merge-ci/curated/minc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:40:03,040 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:40:03,041 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 01:40:03,041 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:40:03,042 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:40:03,042 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:40:03,043 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:40:03,043 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:40:03,043 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:40:03,043 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:40:03,044 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:40:03,044 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:40:03,045 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:40:03,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:40:03,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:40:03,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:40:03,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:40:03,246 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:40:03,246 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:40:03,246 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:40:03,246 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:40:03,246 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 01:40:03,247 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 01:40:03,248 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 204 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-12-08 01:40:03,258] [main] java.version = 17.0.2
   [testng] 01:40:03,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:40:03,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:40:03,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-08_01-40-03.log]
   [testng] 01:40:03,305 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-12-08 01:40:03,307] [main] testng.directory = /data
   [testng] [2024-12-08 01:40:03,307] [main] testng.configDirectory = /config
   [testng] [2024-12-08 01:40:03,318] [main] testng.multiplier = 1.0
   [testng] [2024-12-08 01:40:03,319] [main] testng.in-memory = false
   [testng] [2024-12-08 01:40:03,319] [main] testng.allow-missing = false
   [testng] [2024-12-08 01:40:03,319] [main] user.language = en
   [testng] [2024-12-08 01:40:03,319] [main] user.country = ${user.country}
   [testng] [2024-12-08 01:40:03,319] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-12-08 01:40:03,888] [main] ----------------------------------------
   [testng] [2024-12-08 01:40:03,888] [main] Total files: 15
   [testng] [2024-12-08 01:40:03,888] [main] Scan time: 0.569 s (37 ms/file)
   [testng] [2024-12-08 01:40:03,889] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-12-08 01:40:17,230] [pool-1-thread-1] Initializing /data/samples/ICBM/icbm_template_one.50mm.mnc: 
   [testng] 01:40:17,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:40:17,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:40:17,232 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-08_01-40-17.log]
   [testng] 01:40:17,233 |-INFO in ch.qos.logback.core.sift.SiftProcessor@740596d1 - End of configuration.
   [testng] [2024-12-08 01:40:17,553] [pool-1-thread-12] Initializing /data/bigbrain/8-bit_full_400um_2009b_sym.mnc: 
   [testng] 01:40:17,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:40:17,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:40:17,554 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-08_01-40-17.log]
   [testng] 01:40:17,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e156d11 - End of configuration.
   [testng] [2024-12-08 01:40:18,907] [pool-1-thread-11] Initializing /data/samples/ICBM/icbm_template_6.00mm.mnc: 
   [testng] 01:40:18,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:40:18,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:40:18,908 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-08_01-40-18.log]
   [testng] 01:40:18,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f6da03f - End of configuration.
   [testng] [2024-12-08 01:40:20,487] [pool-1-thread-10] Initializing /data/samples/N3/average_305_mask_1mm.mnc: 
   [testng] 01:40:20,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:40:20,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:40:20,488 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-08_01-40-20.log]
   [testng] 01:40:20,488 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3699872d - End of configuration.
   [testng] [2024-12-08 01:40:20,882] [pool-1-thread-9] Initializing /data/samples/ICBM/icbm_template_2.00mm.mnc: 
   [testng] 01:40:20,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:40:20,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:40:20,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-08_01-40-20.log]
   [testng] 01:40:20,884 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f4f3619 - End of configuration.
   [testng] [2024-12-08 01:40:21,248] [pool-1-thread-8] Initializing /data/daren/test_32bit_float.mnc: 
   [testng] 01:40:21,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:40:21,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:40:21,249 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-08_01-40-21.log]
   [testng] 01:40:21,250 |-INFO in ch.qos.logback.core.sift.SiftProcessor@773cac00 - End of configuration.
   [testng] [2024-12-08 01:40:21,903] [pool-1-thread-7] Initializing /data/bigbrain/pm6479o.mnc: 
   [testng] 01:40:21,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:40:21,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:40:21,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-08_01-40-21.log]
   [testng] 01:40:21,905 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24825cb4 - End of configuration.
   [testng] [2024-12-08 01:40:23,018] [pool-1-thread-6] Initializing /data/bigbrain/full16_400um_2009b_sym.mnc: 
   [testng] 01:40:23,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:40:23,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:40:23,019 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-08_01-40-23.log]
   [testng] 01:40:23,019 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19fe2ba - End of configuration.
   [testng] [2024-12-08 01:40:25,386] [pool-1-thread-5] Initializing /data/samples/ICBM/icbm_template_one.00mm.mnc: 
   [testng] 01:40:25,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:40:25,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:40:25,387 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-08_01-40-25.log]
   [testng] 01:40:25,387 |-INFO in ch.qos.logback.core.sift.SiftProcessor@170eea2c - End of configuration.
   [testng] [2024-12-08 01:40:25,855] [pool-1-thread-4] Initializing /data/qa-17215/IBSR01.mnc: 
   [testng] 01:40:25,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:40:25,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:40:25,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-08_01-40-25.log]
   [testng] 01:40:25,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ba1cd08 - End of configuration.
   [testng] [2024-12-08 01:40:26,366] [pool-1-thread-3] Initializing /data/samples/ICBM/icbm_atlas_cerebellum_avg_53_mask_1mm.mnc: 
   [testng] 01:40:26,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:40:26,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:40:26,367 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-08_01-40-26.log]
   [testng] 01:40:26,367 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60d71e8f - End of configuration.
   [testng] [2024-12-08 01:40:26,896] [pool-1-thread-2] Initializing /data/samples/ICBM/icbm_template_zero.75mm.mnc: 
   [testng] 01:40:26,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:40:26,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:40:26,897 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-08_01-40-26.log]
   [testng] 01:40:26,897 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f75e12f - End of configuration.

BUILD SUCCESSFUL
Total time: 48 seconds
Finished: SUCCESS