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Started by upstream project "BIOFORMATS-test-repo" build number 284
originally caused by:
 Started by upstream project "Trigger" build number 303
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins6485782353191928395.sh
+ '[' afi = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44846_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:49:39,711 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:49:39,712 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 01:49:39,712 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:49:39,713 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:49:39,713 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:49:39,714 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:49:39,714 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:49:39,714 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:49:39,715 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:49:39,715 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:49:39,715 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:49:39,716 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:49:39,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:49:39,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:49:39,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:49:39,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:49:39,909 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:49:39,909 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:49:39,909 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:49:39,910 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:49:39,910 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 01:49:39,911 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 01:49:39,911 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-12-08 01:49:39,920] [main] java.version = 17.0.2
   [testng] 01:49:39,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:49:39,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:39,968 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-08_01-49-39.log]
   [testng] 01:49:39,969 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-12-08 01:49:39,972] [main] testng.directory = /data
   [testng] [2024-12-08 01:49:39,972] [main] testng.configDirectory = /config
   [testng] [2024-12-08 01:49:39,981] [main] testng.multiplier = 1.0
   [testng] [2024-12-08 01:49:39,981] [main] testng.in-memory = false
   [testng] [2024-12-08 01:49:39,982] [main] testng.allow-missing = false
   [testng] [2024-12-08 01:49:39,982] [main] user.language = en
   [testng] [2024-12-08 01:49:39,982] [main] user.country = ${user.country}
   [testng] [2024-12-08 01:49:39,982] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-12-08 01:49:42,322] [main] ----------------------------------------
   [testng] [2024-12-08 01:49:42,322] [main] Total files: 16
   [testng] [2024-12-08 01:49:42,323] [main] Scan time: 2.34 s (146 ms/file)
   [testng] [2024-12-08 01:49:42,323] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-12-08 01:50:02,550] [pool-1-thread-1] Initializing /data/samples/5440.afi: 
   [testng] 01:50:02,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:50:02,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:50:02,551 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-08_01-50-02.log]
   [testng] 01:50:02,551 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cca6671 - End of configuration.
   [testng] [2024-12-08 01:50:03,104] [pool-1-thread-12] Initializing /data/samples/5339.afi: 
   [testng] 01:50:03,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:50:03,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:50:03,106 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-08_01-50-03.log]
   [testng] 01:50:03,106 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7baa514b - End of configuration.
   [testng] [2024-12-08 01:50:04,253] [pool-1-thread-11] Initializing /data/samples/5383.afi: 
   [testng] 01:50:04,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:50:04,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:50:04,254 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-08_01-50-04.log]
   [testng] 01:50:04,255 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e6ab972 - End of configuration.
   [testng] [2024-12-08 01:50:04,738] [pool-1-thread-10] Initializing /data/samples/5306.afi: 
   [testng] 01:50:04,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:50:04,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:50:04,739 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-08_01-50-04.log]
   [testng] 01:50:04,739 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42092bac - End of configuration.
   [testng] [2024-12-08 01:50:05,208] [pool-1-thread-9] Initializing /data/samples/5351.afi: 
   [testng] 01:50:05,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:50:05,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:50:05,209 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-08_01-50-05.log]
   [testng] 01:50:05,209 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b016e2f - End of configuration.
   [testng] [2024-12-08 01:50:05,698] [pool-1-thread-8] Initializing /data/samples/5400.afi: 
   [testng] 01:50:05,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:50:05,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:50:05,699 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-08_01-50-05.log]
   [testng] 01:50:05,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8993ec1 - End of configuration.
   [testng] [2024-12-08 01:50:06,295] [pool-1-thread-7] Initializing /data/samples/5387.afi: 
   [testng] 01:50:06,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:50:06,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:50:06,296 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-08_01-50-06.log]
   [testng] 01:50:06,297 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ee1842 - End of configuration.
   [testng] [2024-12-08 01:50:07,099] [pool-1-thread-6] Initializing /data/samples/5365.afi: 
   [testng] 01:50:07,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:50:07,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:50:07,100 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-08_01-50-07.log]
   [testng] 01:50:07,101 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60aae8bf - End of configuration.
   [testng] [2024-12-08 01:50:08,053] [pool-1-thread-5] Initializing /data/samples/5407.afi: 
   [testng] 01:50:08,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:50:08,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:50:08,054 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-08_01-50-08.log]
   [testng] 01:50:08,054 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c6245ae - End of configuration.
   [testng] [2024-12-08 01:50:10,157] [pool-1-thread-4] Initializing /data/samples/5343.afi: 
   [testng] 01:50:10,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:50:10,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:50:10,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-08_01-50-10.log]
   [testng] 01:50:10,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6963f6d7 - End of configuration.
   [testng] [2024-12-08 01:50:10,658] [pool-1-thread-3] Initializing /data/samples/5371.afi: 
   [testng] 01:50:10,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:50:10,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:50:10,659 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-08_01-50-10.log]
   [testng] 01:50:10,659 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6473f3cd - End of configuration.
   [testng] [2024-12-08 01:50:11,124] [pool-1-thread-2] Initializing /data/samples/5347.afi: 
   [testng] 01:50:11,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:50:11,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:50:11,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-08_01-50-11.log]
   [testng] 01:50:11,126 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2173c84 - End of configuration.
   [testng] [2024-12-08 01:50:52,996] [pool-1-thread-10] Initializing /data/samples/5358.afi: 
   [testng] [2024-12-08 01:50:53,401] [pool-1-thread-3] Initializing /data/samples/5446.afi: 
   [testng] [2024-12-08 01:50:55,468] [pool-1-thread-2] Initializing /data/samples/5414.afi: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 2 minutes 8 seconds
Finished: SUCCESS