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Started by upstream project "BIOFORMATS-test-repo" build number 284 originally caused by: Started by upstream project "Trigger" build number 303 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins9259225683094496676.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_44854_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:00:03,552 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:00:03,554 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 02:00:03,554 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:00:03,556 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:00:03,556 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:00:03,557 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:00:03,557 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:00:03,557 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:00:03,558 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:00:03,559 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:00:03,559 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:00:03,559 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:00:03,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:00:03,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:00:03,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:00:03,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:00:03,795 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:00:03,795 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:00:03,795 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:00:03,795 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:00:03,796 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 02:00:03,796 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 02:00:03,796 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 238 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-08 02:00:03,805] [main] java.version = 17.0.2 [testng] 02:00:03,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:00:03,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:03,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-08_02-00-03.log] [testng] 02:00:03,851 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-08 02:00:03,853] [main] testng.directory = /data [testng] [2024-12-08 02:00:03,853] [main] testng.configDirectory = /config [testng] [2024-12-08 02:00:03,862] [main] testng.multiplier = 1.0 [testng] [2024-12-08 02:00:03,863] [main] testng.in-memory = false [testng] [2024-12-08 02:00:03,863] [main] testng.allow-missing = false [testng] [2024-12-08 02:00:03,863] [main] user.language = en [testng] [2024-12-08 02:00:03,864] [main] user.country = ${user.country} [testng] [2024-12-08 02:00:03,864] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-08 02:04:32,931] [main] ---------------------------------------- [testng] [2024-12-08 02:04:32,931] [main] Total files: 268 [testng] [2024-12-08 02:04:32,931] [main] Scan time: 269.067 s (1003 ms/file) [testng] [2024-12-08 02:04:32,932] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-08 02:09:37,964] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] 02:09:37,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:09:37,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:37,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-08_02-09-37.log] [testng] 02:09:37,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dfce2d8 - End of configuration. [testng] [2024-12-08 02:09:38,801] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] 02:09:38,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:09:38,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:38,802 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-08_02-09-38.log] [testng] 02:09:38,802 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f76d63d - End of configuration. [testng] [2024-12-08 02:09:39,196] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] 02:09:39,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:09:39,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:39,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-08_02-09-39.log] [testng] 02:09:39,197 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59f642a0 - End of configuration. [testng] [2024-12-08 02:09:39,629] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] 02:09:39,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:09:39,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:39,630 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-08_02-09-39.log] [testng] 02:09:39,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ce81cb5 - End of configuration. [testng] [2024-12-08 02:09:40,595] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] 02:09:40,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:09:40,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:40,596 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-08_02-09-40.log] [testng] 02:09:40,596 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25678a7 - End of configuration. [testng] [2024-12-08 02:09:41,277] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] 02:09:41,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:09:41,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:41,278 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-08_02-09-41.log] [testng] 02:09:41,278 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e12d672 - End of configuration. [testng] [2024-12-08 02:09:41,849] [pool-1-thread-7] Initializing /data/steve/TIFF/HAFF SEM: [testng] 02:09:41,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:09:41,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:41,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-08_02-09-41.log] [testng] 02:09:41,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dc87cf8 - End of configuration. [testng] [2024-12-08 02:09:43,613] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] 02:09:43,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:09:43,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:43,614 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-08_02-09-43.log] [testng] 02:09:43,615 |-INFO in ch.qos.logback.core.sift.SiftProcessor@358bc9b8 - End of configuration. [testng] [2024-12-08 02:09:44,070] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] 02:09:44,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:09:44,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:44,070 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-08_02-09-44.log] [testng] 02:09:44,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@578ebfbf - End of configuration. [testng] [2024-12-08 02:09:44,788] [pool-1-thread-4] Initializing /data/steve/FITS/M51.fits: [testng] 02:09:44,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:09:44,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:44,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-08_02-09-44.log] [testng] 02:09:44,789 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30efffc4 - End of configuration. [testng] [2024-12-08 02:09:44,951] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] 02:09:44,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:09:44,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:44,952 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-08_02-09-44.log] [testng] 02:09:44,952 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f53afc4 - End of configuration. [testng] [2024-12-08 02:09:46,682] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] 02:09:46,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:09:46,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:46,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-08_02-09-46.log] [testng] 02:09:46,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d384eb3 - End of configuration. [testng] [2024-12-08 02:09:52,057] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-12-08 02:09:53,463] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-12-08 02:09:54,137] [pool-1-thread-11] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-12-08 02:09:54,614] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-12-08 02:09:56,146] [pool-1-thread-5] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-12-08 02:09:56,521] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-12-08 02:09:57,733] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-12-08 02:09:57,932] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-12-08 02:10:01,447] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-12-08 02:10:03,360] [pool-1-thread-12] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-12-08 02:10:04,238] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-12-08 02:10:04,734] [pool-1-thread-7] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-12-08 02:10:06,383] [pool-1-thread-3] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-12-08 02:10:07,696] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-12-08 02:10:08,113] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-12-08 02:10:09,137] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-12-08 02:10:10,540] [pool-1-thread-5] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-12-08 02:10:12,798] [pool-1-thread-1] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-12-08 02:10:13,670] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-12-08 02:10:16,134] [pool-1-thread-11] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-12-08 02:10:16,445] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-12-08 02:10:16,574] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-12-08 02:10:17,197] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-12-08 02:10:17,736] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-12-08 02:10:18,122] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-12-08 02:10:19,403] [pool-1-thread-8] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-12-08 02:10:21,796] [pool-1-thread-4] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-12-08 02:10:23,481] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-12-08 02:10:26,110] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-12-08 02:10:26,628] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-12-08 02:10:27,708] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-12-08 02:10:28,555] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-12-08 02:10:30,434] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-12-08 02:10:30,955] [pool-1-thread-7] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-12-08 02:10:33,305] [pool-1-thread-9] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-12-08 02:10:34,565] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-12-08 02:10:34,992] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-12-08 02:10:35,317] [pool-1-thread-2] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-12-08 02:10:35,733] [pool-1-thread-1] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-12-08 02:10:37,431] [pool-1-thread-8] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-12-08 02:10:39,221] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-12-08 02:10:42,687] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-12-08 02:10:43,671] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-12-08 02:10:43,884] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-12-08 02:10:44,365] [pool-1-thread-6] Initializing /data/steve/FITS/M104.fits: [testng] [2024-12-08 02:10:44,548] [pool-1-thread-11] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-12-08 02:10:44,724] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-12-08 02:10:46,483] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-12-08 02:10:49,172] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-12-08 02:10:51,785] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-12-08 02:10:53,409] [pool-1-thread-9] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-12-08 02:10:54,394] [pool-1-thread-7] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-12-08 02:10:56,657] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-12-08 02:10:59,209] [pool-1-thread-11] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-12-08 02:11:01,570] [pool-1-thread-1] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-12-08 02:11:02,173] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-12-08 02:11:02,378] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-12-08 02:11:02,891] [pool-1-thread-10] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-12-08 02:11:05,923] [pool-1-thread-4] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-12-08 02:11:06,720] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-12-08 02:11:08,238] [pool-1-thread-12] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-12-08 02:11:09,966] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-12-08 02:11:10,493] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-12-08 02:11:11,425] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-12-08 02:11:11,616] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-12-08 02:11:11,971] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-12-08 02:11:13,383] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-12-08 02:11:15,028] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-12-08 02:11:16,345] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-12-08 02:11:19,166] [pool-1-thread-9] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-12-08 02:11:19,616] [pool-1-thread-4] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-12-08 02:11:20,331] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-12-08 02:11:22,022] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-12-08 02:11:23,350] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-12-08 02:11:23,783] [pool-1-thread-5] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-12-08 02:11:26,278] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-12-08 02:11:28,239] [pool-1-thread-7] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-12-08 02:11:30,013] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-12-08 02:11:32,887] [pool-1-thread-6] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-12-08 02:11:33,681] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-12-08 02:11:34,179] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-12-08 02:11:35,331] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-12-08 02:11:36,512] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-12-08 02:11:37,374] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-12-08 02:11:39,252] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-12-08 02:11:39,929] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-12-08 02:11:41,333] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-12-08 02:11:42,482] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-12-08 02:11:44,333] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-12-08 02:11:46,300] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-12-08 02:11:47,050] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-12-08 02:11:48,712] [pool-1-thread-4] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-12-08 02:11:48,940] [pool-1-thread-3] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-12-08 02:11:49,909] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-12-08 02:11:51,043] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-12-08 02:11:51,684] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-12-08 02:11:52,502] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-12-08 02:11:53,307] [pool-1-thread-4] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-12-08 02:11:53,876] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-12-08 02:11:56,235] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-12-08 02:11:56,721] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-12-08 02:11:58,234] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-12-08 02:12:00,406] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-12-08 02:12:00,921] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-12-08 02:12:02,930] [pool-1-thread-1] Initializing /data/steve/FITS/M13.fits: [testng] [2024-12-08 02:12:03,086] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-12-08 02:12:05,743] [pool-1-thread-10] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-12-08 02:12:08,607] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-12-08 02:12:09,192] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-12-08 02:12:09,825] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-12-08 02:12:11,050] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-12-08 02:12:12,179] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-12-08 02:12:13,627] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-12-08 02:12:15,452] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-12-08 02:12:15,890] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-12-08 02:12:17,829] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-12-08 02:12:19,226] [pool-1-thread-11] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-12-08 02:12:21,760] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-12-08 02:12:22,229] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-12-08 02:12:23,227] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-12-08 02:12:24,387] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-12-08 02:12:25,055] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-12-08 02:12:25,795] [pool-1-thread-2] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-12-08 02:12:28,508] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-12-08 02:12:30,203] [pool-1-thread-3] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-12-08 02:12:32,226] [pool-1-thread-6] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-12-08 02:12:35,931] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-12-08 02:12:38,547] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-12-08 02:12:40,550] [pool-1-thread-12] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-12-08 02:12:42,281] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-12-08 02:12:42,564] [pool-1-thread-4] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-12-08 02:12:43,520] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-12-08 02:12:45,542] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-12-08 02:12:46,929] [pool-1-thread-9] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-12-08 02:12:48,808] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-12-08 02:12:50,390] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-12-08 02:12:50,928] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-12-08 02:12:52,187] [pool-1-thread-3] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-12-08 02:12:52,635] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-12-08 02:12:53,061] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-12-08 02:12:53,519] [pool-1-thread-4] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-12-08 02:12:54,101] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-12-08 02:12:54,565] [pool-1-thread-1] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-12-08 02:12:58,102] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-12-08 02:12:59,437] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-12-08 02:13:00,321] [pool-1-thread-2] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-12-08 02:13:01,555] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-12-08 02:13:02,262] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 13 minutes 13 seconds Finished: SUCCESS