Started by upstream project "BIOFORMATS-test-repo" build number 284
originally caused by:
Started by upstream project "Trigger" build number 303
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins14946885873836778731.sh
+ '[' fluoview = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44864_merge_ci -v /uod/idr/repos/curated/fluoview:/data -v /uod/idr-scratch/merge-ci/curated/fluoview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 03:08:59,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 03:08:59,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 03:08:59,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 03:08:59,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 03:08:59,220 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 03:08:59,220 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 03:08:59,220 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 03:08:59,220 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 03:08:59,221 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5d534f5d - End of configuration.
[testng] 03:08:59,221 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@51c668e3 - Registering current configuration as safe fallback point
[testng] 03:08:59,221 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2e6a8155 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 448 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-08 03:08:59,230] [main] java.version = 17.0.2
[testng] 03:08:59,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:08:59,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:08:59,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-08_03-08-59.log]
[testng] 03:08:59,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-12-08 03:08:59,458] [main] testng.directory = /data
[testng] [2024-12-08 03:08:59,458] [main] testng.configDirectory = /config
[testng] [2024-12-08 03:08:59,589] [main] testng.multiplier = 1.0
[testng] [2024-12-08 03:08:59,590] [main] testng.in-memory = false
[testng] [2024-12-08 03:08:59,590] [main] testng.allow-missing = false
[testng] [2024-12-08 03:08:59,590] [main] user.language = en
[testng] [2024-12-08 03:08:59,590] [main] user.country = ${user.country}
[testng] [2024-12-08 03:08:59,590] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-08 03:09:01,839] [main] ----------------------------------------
[testng] [2024-12-08 03:09:01,839] [main] Total files: 14
[testng] [2024-12-08 03:09:01,839] [main] Scan time: 2.249 s (160 ms/file)
[testng] [2024-12-08 03:09:01,840] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-08 03:09:12,547] [pool-1-thread-1] Initializing /data/jae/BrdU.1c-1.z.Live1-25-2005_11-58-40_AM.tif:
[testng] 03:09:12,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 03:09:12,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:09:12,549 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-08_03-09-12.log]
[testng] 03:09:12,549 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72c36b0e - End of configuration.
[testng] [2024-12-08 03:09:12,918] [pool-1-thread-12] Initializing /data/shalin/40xNA0.6-512x512.tif:
[testng] 03:09:12,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 03:09:12,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:09:12,919 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-08_03-09-12.log]
[testng] 03:09:12,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@294c9bdc - End of configuration.
[testng] [2024-12-08 03:09:13,331] [pool-1-thread-11] Initializing /data/timg/LiveOne.tif:
[testng] 03:09:13,331 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 03:09:13,331 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:09:13,332 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-08_03-09-13.log]
[testng] 03:09:13,333 |-INFO in ch.qos.logback.core.sift.SiftProcessor@675ff2bf - End of configuration.
[testng] [2024-12-08 03:09:13,696] [pool-1-thread-10] Initializing /data/timg/eric-three.tif:
[testng] 03:09:13,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 03:09:13,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:09:13,697 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-08_03-09-13.log]
[testng] 03:09:13,697 |-INFO in ch.qos.logback.core.sift.SiftProcessor@121c8b03 - End of configuration.
[testng] [2024-12-08 03:09:14,288] [pool-1-thread-9] Initializing /data/aaron/olympus_fv500.tif:
[testng] 03:09:14,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 03:09:14,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:09:14,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-08_03-09-14.log]
[testng] 03:09:14,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33c0d06d - End of configuration.
[testng] [2024-12-08 03:09:14,724] [pool-1-thread-8] Initializing /data/timg/eric-one.tif:
[testng] 03:09:14,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 03:09:14,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:09:14,725 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-08_03-09-14.log]
[testng] 03:09:14,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a56bb7b - End of configuration.
[testng] [2024-12-08 03:09:15,159] [pool-1-thread-7] Initializing /data/timg/eric-three-projection.tif:
[testng] 03:09:15,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 03:09:15,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:09:15,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-08_03-09-15.log]
[testng] 03:09:15,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14f2953c - End of configuration.
[testng] [2024-12-08 03:09:15,534] [pool-1-thread-6] Initializing /data/brian/DBTRG 2X 1a-1_DSP.TIF:
[testng] 03:09:15,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 03:09:15,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:09:15,536 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-08_03-09-15.log]
[testng] 03:09:15,537 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f5b0988 - End of configuration.
[testng] [2024-12-08 03:09:16,175] [pool-1-thread-5] Initializing /data/timg/eric-one-3d.tif:
[testng] 03:09:16,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 03:09:16,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:09:16,176 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-08_03-09-16.log]
[testng] 03:09:16,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@308ac299 - End of configuration.
[testng] [2024-12-08 03:09:16,751] [pool-1-thread-4] Initializing /data/timg/LiveTwo.tif:
[testng] 03:09:16,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 03:09:16,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:09:16,752 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-08_03-09-16.log]
[testng] 03:09:16,752 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eab00b7 - End of configuration.
[testng] [2024-12-08 03:09:17,768] [pool-1-thread-3] Initializing /data/timg/LiveThree-xyzt.tif:
[testng] 03:09:17,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 03:09:17,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:09:17,769 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-08_03-09-17.log]
[testng] 03:09:17,769 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bba1926 - End of configuration.
[testng] [2024-12-08 03:09:18,570] [pool-1-thread-2] Initializing /data/timg/E1-v2(11 som).tif:
[testng] 03:09:18,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 03:09:18,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:09:18,571 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-08_03-09-18.log]
[testng] 03:09:18,571 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d816635 - End of configuration.
[testng] [2024-12-08 03:09:24,373] [pool-1-thread-11] Initializing /data/brian/DBTRG 2X 1a-1.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 35 seconds
Finished: SUCCESS