Skip to content

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 284
originally caused by:
 Started by upstream project "Trigger" build number 303
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins4741063066423229239.sh
+ '[' apng = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44892_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 03:39:27,663 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 03:39:27,665 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 03:39:27,665 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:39:27,666 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:39:27,666 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 03:39:27,666 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 03:39:27,667 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 03:39:27,667 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:39:27,667 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:39:27,668 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 03:39:27,668 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 03:39:27,668 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 03:39:27,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 03:39:27,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 03:39:27,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 03:39:27,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 03:39:27,859 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 03:39:27,859 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 03:39:27,859 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 03:39:27,859 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 03:39:27,859 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 03:39:27,860 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 03:39:27,861 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-12-08 03:39:27,869] [main] java.version = 17.0.2
   [testng] 03:39:27,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 03:39:27,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:39:27,913 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-08_03-39-27.log]
   [testng] 03:39:27,915 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-12-08 03:39:27,917] [main] testng.directory = /data
   [testng] [2024-12-08 03:39:27,917] [main] testng.configDirectory = /config
   [testng] [2024-12-08 03:39:27,925] [main] testng.multiplier = 1.0
   [testng] [2024-12-08 03:39:27,926] [main] testng.in-memory = false
   [testng] [2024-12-08 03:39:27,926] [main] testng.allow-missing = false
   [testng] [2024-12-08 03:39:27,926] [main] user.language = en
   [testng] [2024-12-08 03:39:27,926] [main] user.country = ${user.country}
   [testng] [2024-12-08 03:39:27,927] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-12-08 03:39:28,498] [main] ----------------------------------------
   [testng] [2024-12-08 03:39:28,499] [main] Total files: 21
   [testng] [2024-12-08 03:39:28,499] [main] Scan time: 0.571 s (27 ms/file)
   [testng] [2024-12-08 03:39:28,499] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 21 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-12-08 03:39:30,784] [pool-1-thread-1] Initializing /data/samples/MoonPhases.png: 
   [testng] 03:39:30,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 03:39:30,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:39:30,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-08_03-39-30.log]
   [testng] 03:39:30,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24493c1f - End of configuration.
   [testng] [2024-12-08 03:39:30,922] [pool-1-thread-12] Initializing /data/samples/Sun.png: 
   [testng] 03:39:30,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 03:39:30,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:39:30,925 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-08_03-39-30.log]
   [testng] 03:39:30,926 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c18c0c4 - End of configuration.
   [testng] [2024-12-08 03:39:30,957] [pool-1-thread-11] Initializing /data/qa-7473/x.png: 
   [testng] 03:39:30,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 03:39:30,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:39:30,958 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-08_03-39-30.log]
   [testng] 03:39:30,959 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72852c02 - End of configuration.
   [testng] [2024-12-08 03:39:30,993] [pool-1-thread-10] Initializing /data/samples/spinfox.png: 
   [testng] 03:39:30,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 03:39:30,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:39:30,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-08_03-39-30.log]
   [testng] 03:39:30,995 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c64119c - End of configuration.
   [testng] [2024-12-08 03:39:31,031] [pool-1-thread-9] Initializing /data/samples/daniel_coltri_one.png: 
   [testng] 03:39:31,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 03:39:31,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:39:31,033 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-08_03-39-31.log]
   [testng] 03:39:31,033 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a672113 - End of configuration.
   [testng] [2024-12-08 03:39:31,083] [pool-1-thread-8] Initializing /data/samples/StarV838.png: 
   [testng] 03:39:31,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 03:39:31,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:39:31,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-08_03-39-31.log]
   [testng] 03:39:31,085 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e5a17a3 - End of configuration.
   [testng] [2024-12-08 03:39:31,176] [pool-1-thread-7] Initializing /data/samples/william_wong01.png: 
   [testng] 03:39:31,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 03:39:31,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:39:31,177 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-08_03-39-31.log]
   [testng] 03:39:31,178 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fb0e2b - End of configuration.
   [testng] [2024-12-08 03:39:31,353] [pool-1-thread-6] Initializing /data/samples/william_wong04.png: 
   [testng] 03:39:31,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 03:39:31,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:39:31,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-08_03-39-31.log]
   [testng] 03:39:31,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37f51f2c - End of configuration.
   [testng] [2024-12-08 03:39:31,390] [pool-1-thread-5] Initializing /data/colin/test.sfstdge.png: 
   [testng] 03:39:31,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 03:39:31,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:39:31,391 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-08_03-39-31.log]
   [testng] 03:39:31,391 |-INFO in ch.qos.logback.core.sift.SiftProcessor@165209fe - End of configuration.
   [testng] [2024-12-08 03:39:31,421] [pool-1-thread-4] Initializing /data/samples/william_wong02.png: 
   [testng] 03:39:31,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 03:39:31,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:39:31,422 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-08_03-39-31.log]
   [testng] 03:39:31,423 |-INFO in ch.qos.logback.core.sift.SiftProcessor@440b68ed - End of configuration.
   [testng] [2024-12-08 03:39:31,455] [pool-1-thread-3] Initializing /data/samples/monkey_apng.png: 
   [testng] 03:39:31,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 03:39:31,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:39:31,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-08_03-39-31.log]
   [testng] 03:39:31,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2df68f02 - End of configuration.
   [testng] [2024-12-08 03:39:31,490] [pool-1-thread-2] Initializing /data/samples/orbit.png: 
   [testng] 03:39:31,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 03:39:31,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:39:31,491 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-08_03-39-31.log]
   [testng] 03:39:31,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dda4ba6 - End of configuration.
   [testng] [2024-12-08 03:39:34,401] [pool-1-thread-11] Initializing /data/qa-7473/n.tif: 
   [testng] [2024-12-08 03:39:35,311] [pool-1-thread-5] Initializing /data/samples/PhugAnimation3.png: 
   [testng] [2024-12-08 03:39:35,781] [pool-1-thread-6] Initializing /data/samples/joanna_viera01.png: 
   [testng] [2024-12-08 03:39:35,805] [pool-1-thread-2] Initializing /data/samples/phug_logo.png: 
   [testng] [2024-12-08 03:39:35,831] [pool-1-thread-12] Initializing /data/samples/chompy2.png: 
   [testng] [2024-12-08 03:39:35,857] [pool-1-thread-7] Initializing /data/samples/william_wong05.png: 
   [testng] [2024-12-08 03:39:35,880] [pool-1-thread-1] Initializing /data/samples/atom.png: 
   [testng] [2024-12-08 03:39:35,900] [pool-1-thread-8] Initializing /data/samples/Matrix.png: 
   [testng] [2024-12-08 03:39:35,922] [pool-1-thread-3] Initializing /data/samples/daniel_coltri_two.png: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1113, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 16 seconds
Finished: SUCCESS