Started by upstream project "BIOFORMATS-test-repo" build number 285
originally caused by:
Started by upstream project "Trigger" build number 304
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins9484025027999195290.sh
+ '[' metaxpress = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44969_merge_ci -v /uod/idr/repos/curated/metaxpress:/data -v /uod/idr-scratch/merge-ci/curated/metaxpress:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:43:26,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:43:26,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:43:26,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:43:26,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:43:26,115 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:43:26,115 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:43:26,115 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:43:26,116 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:43:26,116 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1139b2f3 - End of configuration.
[testng] 00:43:26,118 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3f197a46 - Registering current configuration as safe fallback point
[testng] 00:43:26,118 |-INFO in ch.qos.logback.classic.util.ContextInitializer@636be97c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 439 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-09 00:43:26,135] [main] java.version = 1.8.0_342
[testng] 00:43:26,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:43:26,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:43:26,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-09_00-43-26.log]
[testng] 00:43:26,192 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-09 00:43:26,194] [main] testng.directory = /data
[testng] [2024-12-09 00:43:26,195] [main] testng.configDirectory = /config
[testng] [2024-12-09 00:43:26,212] [main] testng.multiplier = 1.0
[testng] [2024-12-09 00:43:26,213] [main] testng.in-memory = false
[testng] [2024-12-09 00:43:26,213] [main] testng.allow-missing = false
[testng] [2024-12-09 00:43:26,213] [main] user.language = fr
[testng] [2024-12-09 00:43:26,213] [main] user.country = FR
[testng] [2024-12-09 00:43:26,213] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-09 00:50:26,640] [main] ----------------------------------------
[testng] [2024-12-09 00:50:26,640] [main] Total files: 1231
[testng] [2024-12-09 00:50:26,640] [main] Scan time: 420.426 s (341 ms/file)
[testng] [2024-12-09 00:50:26,641] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 10 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-09 00:54:10,281] [pool-1-thread-1] Initializing /data/public/idr0081/BSF018292-1A/BSF018292-1A.HTD:
[testng] 00:54:10,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:54:10,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:10,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-09_00-54-10.log]
[testng] 00:54:10,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a10200f - End of configuration.
[testng] [2024-12-09 00:54:19,460] [pool-1-thread-10] Initializing /data/samples/single-site-test/single-site.HTD:
[testng] 00:54:19,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:54:19,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:19,461 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-09_00-54-19.log]
[testng] 00:54:19,462 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14cef3ed - End of configuration.
[testng] [2024-12-09 00:54:21,191] [pool-1-thread-9] Initializing /data/public/idr0006/plate 11001_Plate_136/TimePoint_1/plate 11001.HTD:
[testng] 00:54:21,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:54:21,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:21,192 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-09_00-54-21.log]
[testng] 00:54:21,192 |-INFO in ch.qos.logback.core.sift.SiftProcessor@678aed4a - End of configuration.
[testng] [2024-12-09 00:55:24,228] [pool-1-thread-8] Initializing /data/samples/multi-channel-test/multi-channel.HTD:
[testng] 00:55:24,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:55:24,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:55:24,229 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-09_00-55-24.log]
[testng] 00:55:24,230 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65af4ef4 - End of configuration.
[testng] [2024-12-09 00:55:25,298] [pool-1-thread-7] Initializing /data/public/idr0005/Primary_001/2011-04-19-plate-1.HTD:
[testng] 00:55:25,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:55:25,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:55:25,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-09_00-55-25.log]
[testng] 00:55:25,300 |-INFO in ch.qos.logback.core.sift.SiftProcessor@215b0ac2 - End of configuration.
[testng] [2024-12-09 00:55:36,236] [pool-1-thread-6] Initializing /data/samples/multi-z/2011-04-19-plate-1.HTD:
[testng] 00:55:36,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:55:36,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:55:36,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-09_00-55-36.log]
[testng] 00:55:36,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dfa159f - End of configuration.
[testng] [2024-12-09 00:55:49,302] [pool-1-thread-5] Initializing /data/qa-4207/NSC.HTD:
[testng] 00:55:49,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:55:49,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:55:49,306 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-09_00-55-49.log]
[testng] 00:55:49,306 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b1ff592 - End of configuration.
[testng] [2024-12-09 00:55:50,669] [pool-1-thread-4] Initializing /data/samples/thumb-test/2011-04-19-plate-1.HTD:
[testng] 00:55:50,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:55:50,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:55:50,670 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-09_00-55-50.log]
[testng] 00:55:50,670 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1071292f - End of configuration.
[testng] [2024-12-09 00:56:06,251] [pool-1-thread-3] Initializing /data/samples/multi-channel-missing-corner/multi-channel.HTD:
[testng] 00:56:06,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:56:06,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:56:06,252 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-09_00-56-06.log]
[testng] 00:56:06,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73065d17 - End of configuration.
[testng] [2024-12-09 00:56:07,277] [pool-1-thread-2] Initializing /data/public/idr0008/Plate10_Actinome1/Act1_Plate10-SP-A8.HTD:
[testng] 00:56:07,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:56:07,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:56:07,278 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-09_00-56-07.log]
[testng] 00:56:07,279 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a17ff17 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 530, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 55 minutes 21 seconds
Finished: SUCCESS