Started by upstream project "BIOFORMATS-test-repo" build number 285
originally caused by:
Started by upstream project "Trigger" build number 304
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins14086251355515499304.sh
+ '[' bigtiff = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_44972_merge_ci -v /uod/idr/repos/curated/bigtiff:/data -v /uod/idr-scratch/merge-ci/curated/bigtiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:49:10,361 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:49:10,363 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 00:49:10,363 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:49:10,364 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:49:10,364 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:49:10,364 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:49:10,364 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:49:10,365 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:49:10,365 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:49:10,365 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:49:10,366 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:49:10,366 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:49:10,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:49:10,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:49:10,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:49:10,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:49:10,638 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:49:10,638 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:49:10,639 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:49:10,639 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:49:10,639 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 00:49:10,640 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 00:49:10,640 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 275 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-09 00:49:10,650] [main] java.version = 1.8.0_342
[testng] 00:49:10,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:49:10,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:49:10,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-09_00-49-10.log]
[testng] 00:49:10,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-09 00:49:10,705] [main] testng.directory = /data
[testng] [2024-12-09 00:49:10,705] [main] testng.configDirectory = /config
[testng] [2024-12-09 00:49:10,718] [main] testng.multiplier = 1.0
[testng] [2024-12-09 00:49:10,718] [main] testng.in-memory = false
[testng] [2024-12-09 00:49:10,718] [main] testng.allow-missing = false
[testng] [2024-12-09 00:49:10,718] [main] user.language = fr
[testng] [2024-12-09 00:49:10,719] [main] user.country = FR
[testng] [2024-12-09 00:49:10,719] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-09 00:49:11,648] [main] ----------------------------------------
[testng] [2024-12-09 00:49:11,648] [main] Total files: 14
[testng] [2024-12-09 00:49:11,649] [main] Scan time: 0.929 s (66 ms/file)
[testng] [2024-12-09 00:49:11,649] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-09 00:49:28,283] [pool-1-thread-1] Initializing /data/samples/BigTIFF.tif:
[testng] 00:49:28,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:49:28,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:49:28,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-09_00-49-28.log]
[testng] 00:49:28,285 |-INFO in ch.qos.logback.core.sift.SiftProcessor@481437f8 - End of configuration.
[testng] [2024-12-09 00:49:28,831] [pool-1-thread-12] Initializing /data/samples/BigTIFFMotorola.tif:
[testng] 00:49:28,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:49:28,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:49:28,833 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-09_00-49-28.log]
[testng] 00:49:28,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41c287b6 - End of configuration.
[testng] [2024-12-09 00:49:29,732] [pool-1-thread-11] Initializing /data/samples/BigTIFFLong.tif:
[testng] 00:49:29,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:49:29,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:49:29,735 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-09_00-49-29.log]
[testng] 00:49:29,736 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39797dca - End of configuration.
[testng] [2024-12-09 00:49:30,066] [pool-1-thread-10] Initializing /data/colin/7S59P8I1_F00000012.btf:
[testng] 00:49:30,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:49:30,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:49:30,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-09_00-49-30.log]
[testng] 00:49:30,067 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32022a69 - End of configuration.
[testng] [2024-12-09 00:49:32,802] [pool-1-thread-9] Initializing /data/samples/Classic.tif:
[testng] 00:49:32,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:49:32,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:49:32,803 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-09_00-49-32.log]
[testng] 00:49:32,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a38c8b5 - End of configuration.
[testng] [2024-12-09 00:49:33,335] [pool-1-thread-8] Initializing /data/samples/BigTIFFMotorolaLongStrips.tif:
[testng] 00:49:33,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:49:33,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:49:33,335 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-09_00-49-33.log]
[testng] 00:49:33,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53f7e080 - End of configuration.
[testng] [2024-12-09 00:49:33,770] [pool-1-thread-7] Initializing /data/samples/BigTIFFLong8.tif:
[testng] 00:49:33,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:49:33,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:49:33,771 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-09_00-49-33.log]
[testng] 00:49:33,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@454098f3 - End of configuration.
[testng] [2024-12-09 00:49:34,064] [pool-1-thread-6] Initializing /data/carlsen/Olympics8-lzw.tif:
[testng] 00:49:34,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:49:34,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:49:34,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-09_00-49-34.log]
[testng] 00:49:34,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54778f6e - End of configuration.
[testng] [2024-12-09 00:49:34,254] [pool-1-thread-5] Initializing /data/carlsen/Olympics8.tif:
[testng] 00:49:34,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:49:34,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:49:34,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-09_00-49-34.log]
[testng] 00:49:34,255 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60385c5d - End of configuration.
[testng] [2024-12-09 00:49:34,446] [pool-1-thread-4] Initializing /data/samples/BigTIFFSubIFD4.tif:
[testng] 00:49:34,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:49:34,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:49:34,447 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-09_00-49-34.log]
[testng] 00:49:34,447 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42e785b5 - End of configuration.
[testng] [2024-12-09 00:49:34,711] [pool-1-thread-3] Initializing /data/samples/BigTIFFLong8Tiles.tif:
[testng] 00:49:34,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:49:34,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:49:34,712 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-09_00-49-34.log]
[testng] 00:49:34,712 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3783f399 - End of configuration.
[testng] [2024-12-09 00:49:35,290] [pool-1-thread-2] Initializing /data/carlsen/Olympics8-raw.tif:
[testng] 00:49:35,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:49:35,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:49:35,291 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-09_00-49-35.log]
[testng] 00:49:35,292 |-INFO in ch.qos.logback.core.sift.SiftProcessor@335aa2e8 - End of configuration.
[testng] [2024-12-09 00:49:43,137] [pool-1-thread-12] Initializing /data/samples/BigTIFFSubIFD8.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 54 seconds
Finished: SUCCESS